Protein

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Genbank accession
NP_958682.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSNVRVLQRSFGGGEISPEMFGRIDDVKYQSGLAICRNFVVKPQGPAENRAGFAFVREVKDSAKKVRLIPFTYSVTQTMVIELGAGYFRFHTNGGTLLDGAVPYEIANPYAEADLFNIHYVQSADVLTLVHPNYAPRELRRLGATNWQLATIAFTSPVATPTSVTATSNNKGTDYTYRYVVTALDAEGKTESAPSSAGTCTNNLFTNGGANTIAWSASSGASRYNVYKEQGGLYGYIGQTTGTSLVDDNIAPDLSVTPPIYDAVFNAAGDYPAAVSYFEQRRCFAGTTNKPQNIWMTRSGTESAMSYSLPVRDDDRVAFRVAAREANAIRHIVPLTELLLLTSSGEWRVASVNSDAVTPTTISVRPQSYVGATDVQPVVVNNTTIYGAARGGHVRELAYNWQANGFVTGDLSLRAAHLFDNLDILDMAYAKAPQPIVWFISSSGKLLGLTYVPEQQIGAWHQHDTDGVFESCAVVAEGNEDRLYAVVRRTIGGNEVRYVERMASRQFDAQADAFFVDSGLTYSGEPVSHISGLEHLEGKTVSILADGAVHPQRVVTDGAIDLDVEAGTVHIGLPITAELQTLPVAMQLDGSFGQGRVKNINKLWLRVHRSSGIFAGPHADALTEVKQRTSEPYGSPPALKSEEIPLVLSPKWGDSGQLFVRQADPLPLMIVSMSAEIAIGA
Physico‐chemical
properties
protein length:681 AA
molecular weight: 73664,86410 Da
isoelectric point:5,52972
aromaticity:0,08957
hydropathy:-0,12834

Domains

Domains [InterPro]
DC_0058
STR
1–679
DC_0058
IPR013783
STR
194–257
IPR013783
NP_958682.1
1 681
Architecture
STR
STR 1-679 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
NP_958682.1
1 681
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,9945
Central domain 156 363 209 0,0939
C-terminal 364 681 317 0,1574
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-363
C-terminal
364-681

Taxonomy

  Name Taxonomy ID Lineage
Phage Bordetella phage BPP-1
[NCBI] 		2885909 Uroviricota > Caudoviricetes > Rauchvirus >
Host Bordetella bronchiseptica
[NCBI] 		518 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
NP_958682.1 [NCBI]
Genbank nucleotide accession
NC_005357 [NCBI]
CDS location
range 15217 -> 17262
strand -
CDS
ATGTCCAACGTCCGCGTCCTGCAACGCTCCTTCGGCGGCGGCGAAATCAGCCCGGAAATGTTCGGGCGCATCGACGACGTGAAGTACCAAAGCGGCCTCGCCATCTGCCGCAACTTCGTGGTCAAGCCCCAAGGCCCGGCCGAGAACCGCGCCGGCTTCGCCTTCGTGCGCGAGGTGAAGGATTCGGCCAAGAAGGTGCGGCTCATCCCGTTCACCTACTCGGTCACGCAAACAATGGTGATCGAGTTGGGTGCGGGTTATTTTCGCTTCCATACCAACGGCGGCACGCTGCTGGACGGCGCCGTGCCCTACGAAATCGCCAATCCCTACGCCGAAGCCGACCTGTTCAACATCCACTATGTCCAGTCGGCTGACGTGCTCACGCTCGTGCATCCGAACTATGCGCCGCGTGAACTGCGCCGCCTGGGCGCGACCAACTGGCAACTGGCGACCATCGCCTTCACGTCGCCGGTGGCTACGCCCACGAGCGTGACCGCCACGTCGAACAACAAGGGCACCGACTACACCTACCGCTACGTGGTCACGGCCCTGGATGCCGAGGGTAAAACCGAGTCCGCTCCCTCGTCGGCCGGCACCTGCACCAACAACCTCTTCACCAACGGCGGCGCCAACACCATCGCGTGGTCGGCCTCGTCCGGCGCGTCGCGCTACAACGTCTATAAGGAGCAAGGCGGCCTGTACGGCTATATCGGCCAGACCACCGGCACCTCGCTGGTGGACGACAATATCGCGCCCGACCTGTCCGTCACGCCCCCGATCTACGACGCCGTGTTCAACGCCGCCGGCGATTACCCCGCGGCCGTGTCCTACTTCGAGCAACGCCGATGCTTTGCCGGCACTACCAACAAGCCGCAGAACATTTGGATGACGCGCAGTGGCACCGAATCGGCCATGTCGTACTCGCTTCCCGTGCGCGACGACGACCGGGTAGCCTTCCGGGTGGCCGCGCGCGAGGCCAACGCCATCCGCCATATCGTGCCGCTCACCGAGTTGCTGCTGCTCACGTCTTCGGGCGAATGGCGCGTGGCGTCGGTGAACTCCGACGCGGTAACGCCCACCACCATCAGCGTGCGGCCGCAGTCCTACGTCGGGGCCACCGACGTGCAGCCGGTCGTGGTCAACAACACGACCATCTACGGCGCCGCGCGCGGCGGCCACGTGCGCGAACTGGCCTACAACTGGCAGGCCAACGGTTTCGTCACCGGCGACCTGTCCCTGCGCGCGGCGCACCTGTTCGACAATCTCGACATTCTGGACATGGCCTACGCGAAGGCGCCGCAGCCTATCGTGTGGTTCATCAGCAGCAGCGGCAAGCTGCTGGGCCTCACCTACGTGCCCGAGCAACAGATCGGCGCGTGGCACCAGCACGACACGGACGGCGTGTTCGAGTCCTGCGCGGTGGTGGCCGAGGGTAACGAGGACCGGCTCTATGCCGTCGTGCGTCGCACCATTGGCGGCAACGAGGTGCGGTATGTCGAGCGCATGGCCTCGCGCCAGTTCGATGCCCAGGCGGACGCCTTCTTCGTCGATAGCGGCCTGACGTACTCGGGCGAGCCGGTAAGCCATATCAGCGGCCTGGAGCACCTCGAAGGGAAAACCGTCAGCATCCTGGCCGATGGCGCGGTGCATCCGCAGCGCGTCGTCACTGACGGCGCCATTGACCTGGACGTGGAGGCCGGCACCGTGCATATCGGCCTGCCCATCACCGCAGAACTGCAAACCCTGCCGGTGGCGATGCAACTGGACGGCAGCTTCGGCCAAGGGCGCGTCAAGAACATCAACAAGCTGTGGTTGCGCGTGCATCGGTCGTCCGGCATCTTCGCCGGCCCGCACGCGGACGCGCTCACCGAGGTGAAGCAGCGCACGTCCGAACCCTACGGCTCACCGCCTGCACTCAAGAGCGAGGAAATTCCGCTCGTCCTGTCGCCGAAATGGGGCGACAGCGGGCAACTGTTTGTGCGGCAGGCCGACCCTCTGCCGTTGATGATCGTGTCGATGTCGGCGGAAATCGCCATCGGCGCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
9ce450cdb0280486976658dd040d5492439b0ac109297085d40937bd9471a63d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9446
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Generalized transduction in Bordetella bronchiseptica and Bordetella pertussis Liu,M., Martinez de Tejada,G., Bruhn,K.W., Cotter,P.A. and Miller,J.F. 1967-05 — GenBank