Protein

View in Explore
Genbank accession
BFJ60524.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MRVDNLQAETTITEQGERVYSPNNKPSASDIGALPATGKATNSARADLATEALYLTAKDDRDVKPATSNTGKNKKTVKPFFVGNSVFPANNRPFGTYSDLLLMDTYSDASGGRVNGIVACKSSNALFHVQGEQDGEWTTSEKVYTTAQKPTAAEVGAHPNSWRPTWNDVSSKPAQATRWPKWGEISDKPGTMPPDSHTHPWSQITGIPSYATRWPNWGEISGKPGNLLTQTTADTRYLGKTAKATNADKLDGYNSSDFQRIVSKSVSASGGKWYTIAVGESRCNAEFIVTDTNGGQHGYVRFQAGISYGNYPYINILASNAYANANGIIRYLRIVDKDSDRTYGKKELQVYIDTSGTFQSYINLWFTAHNGWNLVNPTVASGTNTERVKIDVDKTTGFHSSADMFVGTHKVYHQGHKPTAADVGAMTQSQGDGRYTRFNYGGTTSFASLTPPKSSWIRSPTSGFLPYSTGTSSLGTSTWKWKDVHGINIYQNGQRVYSPTNKPSAATIGAEPKLATDRKRKITYGTGNPTGGADGDVYIQYK
Physico‐chemical
properties
protein length:542 AA
molecular weight: 58993,45330 Da
isoelectric point:9,26677
aromaticity:0,10332
hydropathy:-0,66550

Domains

Domains [InterPro]
DC_1209
STR
15–96
DC_1209 DC_1002 DC_1142
BFJ60524.1
1 542
Architecture
STR
STR
STR 15-96 | STR 103-470 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BFJ60524.1
1 542
Domain Start End Length (AA) Confidence
N-terminal 1 48 48 0,9537
Central domain 49 247 200 0,1913
C-terminal 248 542 294 0,8599
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-48
Central
49-247
C-terminal
248-542

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VF16
[NCBI] 		3137795 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BFJ60524.1 [NCBI]
Genbank nucleotide accession
LC811684.1 [NCBI]
CDS location
range 83071 -> 84699
strand -
CDS
ATGCGCGTTGATAATTTACAAGCAGAAACAACTATAACAGAACAAGGGGAGAGAGTATACTCTCCCAACAATAAACCAAGTGCCTCAGATATTGGGGCACTTCCAGCTACAGGTAAAGCTACCAACTCAGCAAGAGCAGATCTTGCAACGGAAGCACTTTACCTGACCGCAAAAGACGATAGAGATGTAAAACCTGCAACTAGCAATACAGGTAAAAATAAAAAAACTGTGAAACCATTCTTCGTAGGTAACTCCGTGTTCCCAGCAAATAATAGACCATTTGGAACTTATTCTGACCTATTGCTAATGGATACTTATAGTGACGCTTCCGGTGGGCGTGTTAATGGTATTGTAGCATGTAAAAGCTCTAATGCATTATTCCACGTACAGGGTGAGCAAGATGGAGAGTGGACTACTTCTGAAAAAGTATATACTACTGCTCAAAAACCTACGGCAGCAGAAGTAGGGGCACACCCTAATTCTTGGAGACCTACATGGAATGATGTGTCTAGTAAACCAGCGCAGGCTACACGTTGGCCAAAATGGGGTGAAATTAGTGATAAACCTGGTACTATGCCACCAGACTCCCACACTCATCCATGGTCTCAAATAACTGGTATCCCTAGCTATGCAACACGTTGGCCAAACTGGGGTGAGATATCAGGTAAGCCAGGTAACTTACTAACGCAGACCACTGCTGATACTCGTTATCTTGGTAAGACCGCTAAAGCGACCAACGCTGATAAATTGGATGGGTATAACTCTAGTGATTTCCAGAGGATTGTTAGCAAAAGTGTTAGTGCTTCTGGTGGTAAGTGGTATACTATTGCTGTTGGTGAGTCAAGATGTAATGCTGAGTTTATAGTTACAGACACTAATGGTGGGCAGCATGGTTACGTGAGATTCCAGGCAGGTATCTCATATGGGAACTACCCATACATTAACATACTTGCTAGTAACGCATATGCTAATGCTAATGGTATTATTAGATACTTAAGGATAGTAGACAAAGACTCTGATAGAACTTATGGTAAGAAAGAGCTACAGGTATATATAGATACTTCAGGCACTTTCCAATCATATATAAATTTATGGTTTACTGCACATAATGGATGGAACCTAGTTAACCCTACTGTGGCTTCTGGTACTAATACAGAAAGGGTTAAAATAGATGTGGATAAAACTACAGGCTTCCATTCCAGTGCAGATATGTTTGTGGGTACTCATAAGGTATATCACCAAGGCCATAAACCAACAGCAGCAGATGTAGGAGCTATGACTCAGTCTCAAGGGGACGGCAGATATACTAGATTTAACTATGGAGGAACTACTTCTTTTGCTAGTTTAACTCCGCCTAAATCTAGTTGGATTCGTTCTCCTACATCTGGGTTCCTACCATACTCAACTGGAACATCTAGTCTAGGTACTTCTACTTGGAAATGGAAGGATGTGCACGGTATCAATATATACCAAAATGGTCAAAGAGTGTACTCCCCTACTAACAAACCAAGTGCTGCCACAATAGGGGCCGAACCTAAATTAGCTACAGATAGAAAACGTAAGATTACCTATGGTACGGGTAATCCAACTGGTGGCGCTGACGGTGATGTTTACATTCAATATAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
08f9bb275da4d55bf9ced19b54133d96a05c26dc23616248eeae234e7f7e2f8c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6450
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Combination of a novel bacteriophage and D-serine effectively controls Vibrio parahaemolyticus growth in seafood Miura,D., Yamaki,S., Tabuchi,I., Kawai,Y. and Yamazaki,K. 2024 — GenBank