Protein

View in Explore
Genbank accession
ARQ95336.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDRQVLFRDYQEQVASDHNNLQDYVQSAMDNIVADGISAVRKYSGLMVTKTGQVEVTLGAGRVYDGGQVFSRRSVLTQSLATYVAAAAKRIVTVSAYGQEVETDVETRDYLTDVDTGTVEPRAVAMTRSRDAQLVFTAGAEAADPVPAAVPATHVVVAHIVLDTTQIVSISMVDENAVVSTDALDIRTDLLEAFRAIIEPRVTSLASDLADLANRVQSLGQRADIDKVVEDLARVKESLRYPADASGYGADFYLYDEDSDYLNSALLGYDAKIEEGIRFADANATQFEIQLFSANDPNAANVGGYLLPKYTDVLKISTGAFTSELGIAQYGYQVHSLKQGYMSRTRLRYGGGLSVCTNGNYYNYPGEAPANTALYDFHTASFTSTYIAERDPYNFAHYNTRTDTWWLDTWQEPFMYTVTTDLSITGAQVAQTFLVSNDMIATRLGFYITAKGANEDIHIALCEVTAGMPDLEKVILKTTYAHAGIVNGWNTMPIQPTPLSKGKRYAFVFVSNANHKIGMTSGQAYLDGTFFYSTDGIYYQGDLTKDMMIQVYGAKFASAQVAIEFAPINLDGGFRTIDILTEQWVPGSCQLVYEMRPNGTGEWQPLIQDNAGILAVAPPLAQFRARFVGTSDMMPILHMTGSRVKVYRPKTAWKHVSNAQTVPALSNVAGNVVVTILLEGFDPTPHTHSCNLRVGSTDVAPTSVVTTLKEPTAKRYEKKYIFQAATGTTSFRIVQQGTTNSPQSTFHVAQRVFSTK
Physico‐chemical
properties
protein length:756 AA
molecular weight: 82881,23270 Da
isoelectric point:5,24336
aromaticity:0,09921
hydropathy:-0,14325

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ARQ95336.1
1 756
Domain Start End Length (AA) Confidence
N-terminal 1 324 324 0,9628
Central domain 325 523 200 0,5295
C-terminal 524 756 232 0,6240
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-324
Central
325-523
C-terminal
524-756

Taxonomy

  Name Taxonomy ID Lineage
Phage Bradyrhizobium phage BDU-MI-1
[NCBI] 		1983459 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Bradyrhizobium diazoefficiens
[NCBI] 		1355477 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARQ95336.1 [NCBI]
Genbank nucleotide accession
KY940711 [NCBI]
CDS location
range 65548 -> 67818
strand -
CDS
ATGGACCGCCAAGTTCTCTTCCGCGACTATCAGGAACAGGTCGCATCCGACCACAACAACCTGCAGGACTACGTGCAGTCGGCGATGGACAACATCGTTGCCGACGGCATCAGCGCGGTCCGCAAGTATTCGGGCCTGATGGTCACCAAGACCGGCCAGGTCGAAGTCACCCTCGGCGCCGGCCGCGTGTACGACGGCGGCCAGGTTTTCTCCCGCCGCTCGGTCCTGACGCAGTCGCTCGCCACCTACGTGGCCGCTGCCGCCAAGCGCATCGTCACGGTTTCGGCCTATGGCCAGGAAGTCGAGACGGACGTCGAAACCCGCGACTATCTGACCGACGTCGACACCGGCACGGTCGAGCCCCGCGCTGTGGCGATGACCCGATCCCGCGACGCCCAGCTGGTCTTCACGGCCGGCGCTGAGGCTGCGGACCCGGTTCCTGCCGCCGTCCCGGCGACCCACGTCGTGGTCGCTCACATCGTCCTCGACACCACGCAGATCGTCTCGATCTCGATGGTCGACGAGAACGCGGTGGTGTCCACCGACGCCCTCGACATCCGCACGGACCTGCTCGAAGCGTTCCGCGCCATCATCGAGCCCCGCGTGACCTCGCTGGCTTCGGACTTGGCGGACCTCGCCAACCGCGTCCAGTCGCTCGGTCAGCGTGCCGACATCGACAAGGTCGTCGAAGATCTGGCCCGCGTGAAGGAAAGCCTGCGCTACCCGGCCGACGCTTCGGGCTACGGCGCCGACTTCTACCTCTACGACGAGGACTCGGACTATCTGAACTCCGCGCTGCTCGGCTACGACGCCAAGATCGAAGAGGGTATCCGCTTCGCTGACGCCAACGCCACGCAGTTCGAAATCCAGCTGTTCTCGGCCAACGATCCGAACGCGGCGAACGTCGGCGGCTACCTGCTGCCGAAATACACCGACGTGCTCAAGATCTCGACCGGTGCATTCACCTCGGAACTGGGTATCGCCCAGTACGGCTATCAGGTGCATTCGCTGAAGCAGGGCTACATGTCCCGCACGCGCCTGCGCTACGGCGGCGGCCTGTCGGTCTGTACGAACGGCAACTACTACAACTACCCGGGCGAGGCTCCGGCCAACACCGCTCTGTACGACTTCCACACGGCGTCGTTCACGAGCACGTATATCGCCGAGCGCGATCCCTACAACTTCGCCCACTACAACACGCGGACGGACACCTGGTGGCTCGACACCTGGCAGGAGCCGTTCATGTACACCGTCACCACGGATCTTTCGATCACGGGTGCGCAGGTGGCGCAGACCTTCCTGGTCTCGAACGACATGATCGCGACCCGCCTCGGCTTCTACATCACGGCCAAGGGCGCGAACGAAGACATCCACATCGCTCTCTGCGAAGTGACGGCCGGTATGCCGGACCTCGAAAAGGTGATCCTGAAGACGACCTACGCCCACGCGGGCATCGTCAACGGATGGAACACCATGCCGATCCAGCCGACGCCGCTCTCGAAGGGCAAGCGTTACGCCTTTGTGTTCGTGTCGAACGCCAACCACAAGATCGGCATGACCTCCGGCCAGGCCTACCTGGATGGTACGTTCTTCTATTCGACGGACGGCATCTATTACCAGGGCGATCTGACCAAGGACATGATGATCCAGGTCTACGGCGCCAAGTTCGCTTCCGCTCAGGTCGCGATCGAATTTGCTCCGATCAATCTCGACGGCGGCTTCCGCACGATCGACATTCTGACGGAGCAGTGGGTGCCTGGTTCGTGCCAACTCGTCTACGAGATGCGCCCGAACGGTACCGGTGAGTGGCAGCCGCTGATCCAGGACAATGCCGGCATCCTCGCCGTTGCACCGCCGCTGGCTCAGTTCCGGGCCCGGTTCGTCGGTACGAGCGACATGATGCCGATCCTGCATATGACGGGGTCTCGCGTGAAGGTCTACCGGCCGAAGACGGCGTGGAAGCACGTCTCGAACGCCCAGACCGTTCCGGCACTGTCCAACGTGGCAGGCAACGTGGTGGTCACCATCCTTCTGGAAGGTTTCGACCCGACGCCGCACACGCACTCCTGCAACCTGCGGGTTGGCTCGACGGACGTGGCTCCGACCTCGGTCGTGACCACGCTGAAGGAGCCGACGGCCAAGCGCTACGAGAAGAAGTACATCTTCCAGGCAGCGACCGGCACCACGAGCTTCCGCATCGTGCAGCAGGGCACCACCAACTCGCCGCAGTCGACGTTCCACGTCGCGCAGCGCGTGTTCTCAACGAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
98ea7ccc62c10e3643ac50dc8a6acf03908f508c5056472589e0f20744a46d8d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7374
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of a novel bacteriophage infecting Bradyrhizobium diazoefficiens USDA110T Liu,J., Yu,H., Huang,Y., Yu,Z., Fan,G., Jin,J., Liu,X. and Wang,G. 2017-07-27 — GenBank