Protein

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Genbank accession
XCO42282.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MVDTCNINGVCGTGDWNGPKPGDPNMNDLLLKATPAFGGIDIEFTWPTTNPGAVGTTRLFRSTDANFAGATIRAFVNGNFYFDKTDPGSKVDQRYYYWIQLVSINGTDGEIIGPASATARPLIEQMIEQLTGEIDSGLLSQELRKEIAQIELNKLGITQEEIERAKNDDALGVRLTQIDAKMDQNTAILQEEVRARVTADSSLVQTVNTMYADFNGNIAAIQQENTVLATKVNALASSVTTINATVNGDSASGKVGLVAEVQTLDGKVTQIGARWTATVDVNGLVGGFGVYNDGRTVEAGFNVDRFWIGRPGTPKNPGSYPFIIDNNIVYIKEAAIQKLTFDKLRAQDGSFIVQNGKIQADYIEAKDIVVNNIQSDNYQPGVQGWAFRPNGIMEINGTAGTGRMTINNATIKVFDQAGKLRVHIGNLQA
Physico‐chemical
properties
protein length:429 AA
molecular weight: 46362,47970 Da
isoelectric point:4,81275
aromaticity:0,07459
hydropathy:-0,23497

Domains

Domains [InterPro]
DC_1382
STR
25–429
DC_1382
IPR013783
STR
31–118
IPR013783 Coil IPR015406
IPR053171
Unmapped
149–413
IPR053171
XCO42282.1
1 429
Architecture
STR
STR 25-429
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_Pae_TUMS_PL
[NCBI] 		3163585 No lineage information
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCO42282.1 [NCBI]
Genbank nucleotide accession
PP910670.1 [NCBI]
CDS location
range 37500 -> 38789
strand +
CDS
ATGGTAGACACTTGCAACATCAATGGGGTCTGCGGAACTGGGGACTGGAATGGTCCTAAGCCCGGTGACCCCAACATGAATGACCTACTGCTGAAGGCAACTCCTGCCTTCGGTGGTATCGACATTGAGTTCACTTGGCCGACCACAAACCCAGGAGCAGTAGGTACTACTCGACTGTTCCGTAGCACTGATGCGAACTTCGCTGGTGCAACTATCCGTGCCTTCGTCAATGGTAACTTCTACTTCGACAAGACAGACCCTGGCTCCAAGGTAGATCAACGCTACTACTACTGGATTCAGCTGGTTTCGATCAATGGCACTGATGGTGAGATCATTGGTCCAGCTTCGGCTACTGCTCGTCCACTCATTGAGCAGATGATTGAGCAGCTTACTGGTGAGATTGACAGTGGTCTTCTTTCCCAAGAGTTGAGGAAAGAGATTGCTCAGATCGAACTGAACAAGCTGGGGATCACCCAGGAAGAGATTGAACGAGCCAAGAACGATGATGCTCTCGGTGTTCGTCTCACTCAGATCGATGCGAAGATGGATCAGAATACTGCCATCTTGCAGGAAGAGGTTCGTGCTCGTGTAACTGCTGACAGTTCTCTGGTTCAGACAGTCAACACTATGTACGCAGACTTCAACGGAAACATCGCAGCAATCCAGCAAGAGAACACTGTGCTGGCTACCAAGGTGAATGCCTTGGCTTCGTCTGTGACCACGATCAACGCCACGGTCAACGGTGACTCGGCCTCTGGTAAGGTTGGCTTGGTTGCCGAGGTACAGACCCTAGACGGCAAGGTTACCCAGATCGGTGCTCGCTGGACTGCGACTGTTGATGTGAATGGTTTGGTCGGTGGCTTCGGTGTCTACAACGATGGCCGGACTGTCGAAGCTGGCTTCAACGTAGACCGCTTCTGGATCGGTCGTCCTGGTACTCCGAAGAACCCAGGCAGCTACCCGTTCATCATCGACAACAACATTGTCTACATCAAGGAAGCTGCCATCCAGAAGTTGACCTTCGACAAGCTCAGGGCACAGGATGGAAGCTTCATTGTTCAGAACGGTAAGATCCAGGCTGACTACATCGAAGCCAAGGATATCGTGGTGAACAACATCCAGTCGGACAACTACCAACCAGGTGTCCAAGGCTGGGCATTCCGTCCCAACGGGATCATGGAAATCAACGGTACGGCAGGAACTGGCCGTATGACTATCAACAACGCCACCATCAAGGTGTTTGACCAAGCAGGCAAACTCCGGGTGCACATTGGGAACCTACAAGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5a66ad90d7fff58bb097a3e3a88f2d8f8a255438e051243b616bce84a08d5a89
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7846
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, Characterization and Genomic Analysis of vB_Pae_TUMS_PL, A Lytic Bacteriophage against Pseudomonas aeruginosa Kamyab,H., Torkashvand,N., Shahverdi,A.R., Khoshayand,M.R., Sharifzadeh,M. and Sepehrizadeh,Z. 2022-11-10 — GenBank