Protein

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Genbank accession
YP_009146416.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
Protein sequence
MNFSFTRDTGDGVKTVFTMSFAGQDEGYLNASNIHVLVNGVEVPFTINPTDPNKVYLSTAPANGADVLIRRIMPKNVPYSDFKNGNPFSQDTLNYTQLQQLYVTQELLDGFLPDGFYFKQDVNMGGYNIKNLGDAVDPDDAVKKEVTDDLGNRVSSLEDNLTDTSLTTVPWRFVATGGEITISPPYSFTNALLYINGVTQTIGADYAYTVSGNQLHLPEPLRAGDEVFVIIGTNIQPPSDLISYDGAIIAYASMVTGVPVQQVYIPVVGLTVSNALVFIDNGVIHTLNAPASGVITSIAWPDIVIS
Physico‐chemical
properties
protein length:306 AA
molecular weight: 33101,78170 Da
isoelectric point:4,21111
aromaticity:0,09804
hydropathy:0,03203

Domains

Domains [InterPro]
DC_0041
STR
1–302
DC_0041
IPR005604
ATT
4–110
IPR005604
YP_009146416.1
1 306
Architecture
ATT
STR
ATT 1-110 | STR 111-302 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009146416.1
1 306
Domain Start End Length (AA) Confidence
N-terminal 1 305 305 0,9940
Central domain 306 305 1 0,4891
C-terminal 306 306 0 0,0000
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-305
Central
306-305
C-terminal
306-306

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage ECBP5
[NCBI] 		1498172 Uroviricota > Caudoviricetes > Autographivirales > Gajwadongvirus ECBP5 >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009146416.1 [NCBI]
Genbank nucleotide accession
NC_027330.1 [NCBI]
CDS location
range 34937 -> 35857
strand +
CDS
ATGAACTTCTCTTTTACTCGTGATACTGGTGACGGAGTTAAGACAGTATTCACAATGTCCTTTGCAGGACAGGATGAGGGCTATTTGAATGCCTCTAATATTCACGTACTTGTTAATGGTGTAGAGGTTCCATTTACCATTAACCCAACTGACCCTAATAAGGTATACCTATCAACTGCCCCAGCTAATGGGGCTGATGTCCTTATCAGGCGTATCATGCCTAAGAACGTGCCTTACTCTGACTTCAAGAACGGAAACCCATTTAGTCAGGATACGCTGAACTATACCCAGCTACAGCAGTTGTATGTGACACAAGAGCTACTTGATGGTTTCCTTCCAGATGGCTTCTACTTTAAGCAAGATGTCAACATGGGTGGTTATAACATCAAGAACTTGGGTGATGCTGTAGACCCTGATGATGCAGTTAAGAAAGAGGTAACTGATGATTTGGGTAATAGGGTAAGCTCTCTAGAAGATAATCTTACTGATACCTCGTTAACTACCGTTCCTTGGCGGTTTGTTGCAACTGGTGGAGAGATTACAATATCACCTCCTTACTCTTTCACAAATGCCCTTCTCTACATCAATGGCGTTACACAGACCATAGGTGCAGATTATGCATACACAGTATCTGGTAATCAGCTACATCTACCTGAGCCACTAAGAGCTGGAGATGAGGTGTTTGTTATCATTGGAACCAACATACAGCCGCCTAGTGATTTAATCTCCTATGATGGGGCTATTATTGCATATGCGAGTATGGTGACTGGTGTACCTGTTCAGCAGGTCTATATACCTGTTGTTGGCCTCACCGTAAGTAACGCACTGGTTTTTATTGATAATGGCGTTATTCATACCCTTAATGCACCTGCTAGCGGGGTTATCACTTCCATAGCTTGGCCTGATATTGTTATATCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
b4cb0a6bfa6a80c54f63e31f9a555237eb32ab39fcdfddc8c22b00f6ed8999bb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7253
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Escherichia coli phage ECBP5 Lee,J.S., Jang,H.B., Kim,K.S., Kim,T.H., Park,S.B., Nho,S.W., Yu,J.E., Yu,J.E., Im,S.P., Kim,S.W. and Jung,T.S. 2015-04-30 — GenBank