Protein

View in Explore
Genbank accession
YP_010093553.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MAKIPRIQFKRTKTPGTKPSKDILAEGELAINLADRTLFTKSGDDIIDLGFAKGGTVNGDINQEAGNFTTNGSMTAKTYIDIKNSLNDKKIFRLSYEGDRGALLSVNEGDNKWKTILVPLDEDGTKTIATREHVGKMVSTNDGETKLRAPNQTNLLIAKDNKELVWYDGSTNNRMVNFGAGGLDLAHKGSDIVGVSLYKKDGNQVRIETHAHSSSLMLAFAYKDSAGNNSYVINMPKENGVLASQQWVDGKYYKRNDSPSFKEYVNVFHNTTGSYTQLGYGNAGATWSVNTGGNWYILKHPLANGTVASQEWTNKIVNHNGQQVELISPNGTMKATLQNNGTFSTWNGNGNPISVDVVGNTSVTGTIQAVSSVTARTANSNTIFGLFVRDKEAFLSLNIDNKWVGELHHPKTSGTIATQQWSNGQHYAKSETYNKSEIDGKVNGRLTQAQGDARYALSNLYQSEGGESRVWNGSKTYYLFTNNNANSGLYKHGTGYIWGFNASGQMTAGLIPIGCGGTGAKDAGTARANLSIYSKAETDGRYPLKNDVYAKSSTYSRAEVDSRVNGRLTQATADGRYAYKGGANAQNFGANIVDAADVNIRSDLTVKSNLVKINNAIQTVKSLTGYTYDLKLNDNTYKQSAGIIAQDVQKVLPALVTEDSLGLLSVNYNGLTAVLVNAINELSERLERLERGV
Physico‐chemical
properties
protein length:693 AA
molecular weight: 75184,67440 Da
isoelectric point:8,96035
aromaticity:0,08225
hydropathy:-0,51154

Domains

Domains [InterPro]
DC_0000
STR
1–693
DC_0000
IPR030392
CHP
602–656
IPR030392 Coil
IPR030392
CHP
602–693
IPR030392
YP_010093553.1
1 693
Architecture
STR
STR 1-693
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010093553.1
1 693
Domain Start End Length (AA) Confidence
N-terminal 1 77 77 0,3837
Central domain 78 276 200 0,2245
C-terminal 277 693 416 0,7853
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-77
Central
78-276
C-terminal
277-693

Taxonomy

  Name Taxonomy ID Lineage
Phage Proteus phage phiP4-3
[NCBI] 		2065203 Uroviricota > Caudoviricetes > Pantevenvirales > Bragavirus > Bragavirus p43
Host Proteus penneri
[NCBI] 		102862 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010093553.1 [NCBI]
Genbank nucleotide accession
NC_055737 [NCBI]
CDS location
range 7231 -> 9312
strand -
CDS
ATGGCAAAAATTCCAAGAATACAATTTAAAAGAACTAAAACACCAGGAACAAAGCCTTCAAAAGATATTTTAGCTGAAGGTGAATTAGCAATTAACTTAGCTGATAGAACTCTTTTTACAAAATCCGGAGATGATATTATTGATCTTGGCTTTGCTAAAGGCGGCACAGTTAATGGAGATATTAATCAAGAAGCTGGAAATTTTACAACCAATGGGTCAATGACTGCTAAAACATACATTGATATAAAAAATAGCTTAAATGACAAAAAAATATTTAGGCTTTCTTATGAAGGAGATCGTGGCGCTTTATTGTCTGTTAATGAAGGCGACAATAAATGGAAAACTATACTTGTTCCATTAGACGAAGATGGGACTAAAACTATAGCTACTCGTGAACACGTAGGAAAAATGGTTTCTACTAATGATGGAGAAACCAAATTAAGGGCTCCAAACCAGACTAACTTATTGATTGCAAAAGACAATAAAGAACTTGTTTGGTACGATGGATCCACTAATAATAGAATGGTTAATTTTGGTGCAGGTGGTTTAGATTTAGCCCACAAAGGTAGTGATATTGTCGGAGTTAGTTTATACAAAAAGGATGGCAACCAGGTTAGAATAGAAACACACGCTCACTCGTCTTCTTTGATGTTAGCATTTGCCTATAAAGATTCTGCAGGAAATAATTCATATGTAATCAATATGCCAAAAGAAAATGGCGTTTTAGCATCTCAACAATGGGTAGATGGAAAATATTATAAAAGGAATGACAGCCCATCGTTCAAAGAATACGTTAATGTTTTTCATAATACCACAGGGTCTTATACTCAATTAGGATATGGTAATGCAGGTGCTACATGGTCAGTTAACACAGGCGGCAATTGGTATATATTAAAACATCCCCTAGCTAATGGTACAGTTGCTTCTCAAGAATGGACTAATAAAATAGTTAACCATAACGGCCAACAAGTTGAGTTGATCTCTCCTAATGGAACTATGAAAGCAACACTTCAAAATAATGGCACATTTAGTACATGGAATGGTAATGGTAATCCAATATCAGTTGATGTTGTTGGTAATACTAGTGTAACAGGGACTATTCAAGCAGTATCTTCAGTTACAGCAAGAACCGCCAATAGTAATACTATTTTTGGACTTTTTGTTAGAGATAAAGAAGCATTTTTGTCTCTAAACATAGATAATAAGTGGGTTGGCGAACTCCATCATCCTAAGACATCCGGGACAATTGCCACTCAACAATGGTCAAATGGCCAACATTACGCTAAATCTGAAACCTATAATAAATCAGAAATTGATGGCAAAGTTAACGGGCGTTTAACCCAAGCTCAAGGTGATGCCAGATATGCACTATCCAATTTGTACCAAAGTGAAGGAGGTGAAAGCCGAGTATGGAATGGCTCAAAAACATATTATCTATTTACTAATAATAATGCAAATTCTGGATTATATAAACATGGTACTGGATATATATGGGGTTTTAATGCTAGTGGACAAATGACTGCTGGGCTTATACCTATTGGTTGCGGCGGTACAGGCGCAAAAGACGCTGGTACCGCTAGAGCAAATTTATCTATATATTCAAAAGCCGAGACTGACGGAAGGTATCCTTTAAAAAATGATGTTTACGCTAAATCATCAACATATTCTAGAGCAGAAGTTGATTCTCGTGTAAATGGTAGATTAACACAAGCCACGGCGGATGGCAGATATGCATACAAAGGTGGTGCTAATGCTCAAAACTTTGGTGCTAATATAGTTGATGCTGCCGACGTTAATATTCGTTCAGATTTAACTGTAAAATCAAATTTAGTCAAAATAAATAATGCTATACAAACTGTTAAATCATTAACAGGGTATACATATGATTTAAAACTAAACGATAATACATATAAACAATCTGCAGGTATAATAGCACAAGATGTACAAAAAGTTCTACCAGCATTAGTTACAGAAGACTCATTAGGATTATTATCTGTTAATTATAATGGTTTAACTGCAGTTCTTGTTAATGCTATAAACGAATTATCTGAAAGATTAGAAAGATTAGAACGAGGTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
db5a4894755724e44aeae5283374b4d0296c3041da8a8092cfa592447ab2ad91
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6820
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence and characterization of bacteriophage phiP4-3 infecting Proteus pennea He,Y. and Yang,H. 2022-06-07 — GenBank