Protein

View in Explore
Genbank accession
AXC41222.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVLSLNDLQVAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGVNDADKAVLWPKEDGGDGNYYAWRGSLPKVIPAASTPLTTGGISDSAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFTNGETVNFGGKTLTIDCKAKFIGDGNLVFTQLGKGSIVIAPFMESATTPWVIKPWTDDNQWITDPAAIVATLKQSKTDGYQPTVNDYAKFPGIESLLPPEAKDQNISSVLEIRECTGVEVHRASGLMACFLFRGCNFCKMVDADNPSGGKDGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFARDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSAVLYPVWDGFDLGADTDMNPEDDRPGDFPYSQYPVYMLPLNHLIDNLLVRGSLGVGLGMDGQGLYVSNITVEDCAGSGAYLLTHETVFTNIAIIDTNTKDFPANQIYISGACRVNGLRLVGIRSTSGQGVTIDAPNSTVSGITGLVDPSRINVANLAEEGLGNSRINSFNNDSAALRLRIHKLSKTLDSAAVYSHINGGPGSGSAWTEVTAIAGSLPDAVSLKINRGDYRAVEIPVAVTVLPDNAVRDNGSISLYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72711,45120 Da
isoelectric point:4,92722
aromaticity:0,08626
hydropathy:-0,14795

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
71–132
IPR040775 IPR012332
IPR015331
RBD
138–684
IPR015331
AXC41222.1
1 684
Architecture
ATT
STR
ATT 65-135 | STR 136-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXC41222.1
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9936
Central domain 155 601 448 0,9912
C-terminal 602 684 82 0,8432
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-601
C-terminal
602-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage S120
[NCBI] 		2231349 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica serotype Typhimurium LT2
[NCBI] 		1457319 Ascomycota > Sordariomycetes > Xylariales > Xylariaceae > Lopadostoma >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXC41222.1 [NCBI]
Genbank nucleotide accession
MH370373.1 [NCBI]
CDS location
range 24746 -> 26800
strand +
CDS
ATGTCTAGTGGTTGCGGTGATGTATTGTCACTTAACGATTTACAGGTAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGCAAACAGGGTGGTGTAGCTGGCGGCGCAGATATCGACTACGCCACTAACCAGGTAACCGGGCAGACGCAGAAGACCCTGCCCGCTGTTTTACGCGATGCTGGTTTCTCCCCGGCGTCTTTTAATTTTACGACCGGGGGTACTCTCGGCGTAAACGACGCAGATAAAGCTGTTCTTTGGCCGAAAGAAGATGGTGGAGACGGTAACTACTACGCATGGCGTGGCTCCCTGCCGAAAGTTATCCCTGCGGCGTCGACACCTCTTACGACAGGCGGCATTTCGGATTCCGCTTGGGTCGCGTTCGGGGATATCACCTTCCGTGCCGAAGCAGATAAGAAATTTAAATACTCCGTTAAGCTTTCCGACTTCACTACGTTACAGCAACTAGCGGATGCCGCTGTTGACAGCGTTCTTATCGACCGCGATTACACCTTTACCAATGGTGAAACTGTTAACTTCGGCGGGAAGACCCTGACCATCGACTGTAAAGCGAAGTTTATTGGTGACGGAAACCTGGTATTTACGCAATTAGGTAAAGGTTCCATTGTAATAGCCCCCTTTATGGAGAGCGCTACAACGCCGTGGGTGATTAAACCGTGGACCGACGATAATCAGTGGATAACCGACCCCGCGGCAATCGTGGCCACACTTAAACAGTCTAAAACAGATGGATACCAGCCGACGGTAAACGATTACGCCAAGTTTCCTGGAATAGAATCACTCCTCCCCCCGGAAGCTAAAGACCAAAACATTTCGTCTGTCCTTGAGATACGGGAATGTACAGGCGTCGAGGTTCACCGGGCGAGTGGTCTTATGGCGTGTTTCCTGTTCCGCGGGTGCAATTTCTGTAAGATGGTAGACGCCGATAACCCAAGCGGCGGGAAGGACGGCGTAATCACCTTCGAAAATTTAAGCGGCGATTGGGGTAAGGGGAACTATGTTATTGGTGGCCGCACGAGTTACGGCTCAGTAAGTAGCGCGCAATTTTTACGTAACAATGGTGGTTTCGCGCGAGATGGTGGGGTCATAGGATTTACCTCGTATCGCGCAGGGGAAAGTGGTGTTAAAACATGGCAAGGTACGGTAGGTTCTACGACCTCTCGTAACTACAACCTGCAATTCCGGGATTCTGCGGTACTATACCCTGTATGGGACGGCTTCGATTTAGGCGCAGATACTGACATGAACCCAGAAGATGACCGCCCGGGGGATTTCCCATATTCCCAATACCCGGTATATATGCTCCCTCTAAACCATTTAATTGACAATCTACTGGTTAGGGGTTCTTTGGGGGTAGGTTTAGGCATGGACGGGCAGGGCCTATATGTTTCAAATATAACTGTAGAGGATTGTGCAGGTTCGGGTGCGTATCTTCTTACTCACGAAACGGTATTCACTAATATTGCTATAATCGACACAAATACTAAAGATTTTCCAGCGAATCAGATATACATCTCCGGGGCCTGCCGTGTAAATGGCCTTCGTTTGGTAGGTATACGCTCTACTAGTGGGCAGGGGGTGACGATAGACGCTCCTAACTCCACTGTAAGCGGTATAACCGGTCTCGTTGACCCATCAAGAATCAATGTGGCCAATTTAGCGGAGGAAGGTCTAGGAAACTCACGAATTAATAGTTTTAATAACGATTCTGCGGCGCTGCGGTTACGGATACATAAACTGTCAAAAACTTTAGATAGCGCTGCTGTGTATTCGCACATAAACGGCGGCCCTGGTTCGGGTTCCGCGTGGACAGAAGTCACGGCTATTGCGGGGAGCTTGCCCGATGCCGTGTCATTAAAAATAAATAGGGGCGATTATCGTGCTGTTGAGATACCGGTAGCGGTGACCGTCCTACCAGACAACGCTGTCAGGGATAACGGGTCTATATCACTGTATCTGGAGGGCGATAGCCTTAAAGCGTTAGTTAAGCGGGCCGACGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
396e9dbcfeddac82971e7bfbe05aacc7441570ef80616103b05ceaa4bc80fc51
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6900
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50