Protein

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Genbank accession
AUX83697.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGCGDVLSLADLQTAKKHQIFEAEVITGKSGGVATGADIDYATNPVTGQTQKTLPAVLRDAGFSPVSWDFATGGTLTVSDRDKVVYDPVSETWYSYAGTLPVTVPAGFNPVGNADWKPQTDPDLRSDLTAPSSGLIVDASNIFIKASSPGTKDVPLNTFAGQMVSLLNFQGVVADGITDTRAGVQAAIDACALAGVTLYIPDGVYAFGNFFTQPSNSKLVFGENAWFKLLNNTTWPGLGGIGHFHNTGTNYNDFLNTDGETIKYVEATNVVTVGMKLDCNNIEGENGISSAWGSNIRHIRPIVKNTVHTNTALGGRAFQIEGELNQDIVVSDATIIDCSIGCNSQGLAGSTTANTRAVTYDGIFMKNVGVPFNIDGQVSNPETADGRVHSVTAYNVTLHNCGGPKAPFASQLDGGIICGDRGAGLAIYGLRLINEDSYGGIGAVFRGVIYNVAIHDADLTAPYISAIVDHTPPGFGSPSLAALGGFVSTRNVKVNANIDYIANGPNNSIGPHSLRLDIDMAKASITTLFGSSIASDPTTLAMVEILDTNTGTSSGYRSFGDIYREGNSPSVCIKRKDSIGPVVPVDASGASLPLTPNGVQRFVRNGNTVTISIDVTYPTTADSRPATISGIPVPGVTGVNYCGIGTVLNGAAAGTIAVVKGGENFIRLLTPTGSNTLNSDLSGKNISISLTYMF
Physico‐chemical
properties
protein length:696 AA
molecular weight: 72494,28640 Da
isoelectric point:4,93979
aromaticity:0,07471
hydropathy:0,01537

Domains

Domains [InterPro]
DC_1596
STR
1–377
DC_1596
G3DSA:2.10.10.80
ATT
65–132
G3DSA:2.10.10.80 IPR012334
IPR011050
STR
173–423
IPR011050
AUX83697.1
1 696
Architecture
STR
ATT
STR
STR 1-64 | ATT 65-132 | STR 133-461 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUX83697.1
1 696
Domain Start End Length (AA) Confidence
N-terminal 1 181 181 0,9929
Central domain 182 546 366 0,9903
C-terminal 547 696 149 0,9810
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-181
Central
182-546
C-terminal
547-696

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS-Ro145clw
[NCBI] 		2079541 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUX83697.1 [NCBI]
Genbank nucleotide accession
MG852086.2 [NCBI]
CDS location
range 15530 -> 17620
strand +
CDS
ATGTCAAGCGGATGCGGTGACGTTTTAAGCTTGGCGGATTTACAAACCGCCAAGAAACACCAGATTTTTGAAGCCGAGGTTATCACCGGTAAATCCGGCGGTGTTGCTACGGGAGCTGATATCGATTACGCGACCAACCCTGTTACCGGCCAGACTCAAAAGACGCTACCCGCCGTGTTGCGTGACGCTGGTTTTTCACCCGTGTCATGGGACTTCGCCACTGGCGGAACGTTAACAGTTAGTGACCGCGACAAAGTGGTGTACGACCCTGTAAGTGAAACATGGTACTCATACGCAGGTACACTACCTGTTACAGTCCCCGCTGGTTTTAACCCTGTTGGTAATGCGGACTGGAAGCCGCAGACAGACCCGGATTTGAGGTCCGATTTAACCGCCCCATCATCGGGTCTTATTGTCGATGCATCCAATATTTTCATCAAAGCTAGTTCTCCTGGTACAAAGGATGTTCCGTTAAACACATTTGCGGGCCAGATGGTTAGTTTACTTAATTTCCAGGGAGTGGTAGCCGATGGTATAACCGATACACGAGCCGGGGTGCAAGCTGCGATAGACGCGTGTGCTCTCGCTGGGGTTACGTTATATATCCCAGACGGTGTGTATGCTTTCGGAAACTTCTTCACCCAACCTTCTAATTCTAAGCTAGTTTTCGGTGAAAATGCATGGTTTAAACTACTAAATAACACCACCTGGCCTGGGCTTGGCGGTATAGGCCACTTCCACAACACCGGAACTAACTACAATGATTTCCTTAATACGGACGGTGAAACTATTAAGTATGTAGAAGCTACCAATGTAGTCACTGTAGGAATGAAGCTGGACTGTAACAATATTGAGGGTGAAAACGGCATTTCATCAGCATGGGGTTCTAATATCCGCCATATCCGCCCTATAGTTAAGAATACAGTACACACAAACACCGCTCTAGGCGGTAGGGCGTTTCAGATAGAAGGTGAGCTAAACCAAGATATTGTAGTATCAGATGCCACTATTATTGATTGCTCTATTGGGTGCAATAGCCAAGGTTTAGCAGGCAGCACAACCGCCAACACCCGCGCAGTAACTTACGACGGTATTTTCATGAAAAATGTTGGAGTACCATTTAACATCGATGGGCAGGTATCCAACCCCGAAACCGCAGACGGCAGAGTACATTCAGTAACCGCATACAATGTAACATTGCATAATTGTGGCGGGCCGAAAGCACCATTTGCATCCCAATTAGACGGCGGCATTATTTGCGGGGATCGTGGGGCTGGTTTAGCAATATACGGTCTTCGTTTGATAAATGAGGATTCTTATGGTGGTATAGGCGCGGTGTTTAGAGGGGTTATTTATAACGTAGCTATACACGACGCAGATTTAACAGCCCCTTATATTAGTGCCATTGTCGACCACACTCCGCCGGGGTTTGGCTCACCATCACTGGCAGCATTAGGCGGTTTTGTGTCGACAAGGAACGTTAAAGTAAACGCGAATATTGACTACATAGCTAATGGGCCTAACAACAGTATAGGTCCTCACAGCCTTAGATTAGATATAGATATGGCTAAGGCATCTATTACAACATTGTTTGGTTCGAGCATAGCCTCGGACCCTACCACGCTGGCTATGGTGGAAATATTAGATACCAACACCGGGACAAGTAGTGGGTATCGGTCCTTTGGGGACATATACCGTGAAGGCAACTCCCCATCTGTCTGTATAAAACGAAAAGATTCCATCGGGCCTGTAGTCCCGGTTGATGCGTCTGGCGCGAGTCTACCCCTTACCCCTAATGGGGTCCAACGTTTTGTTAGAAATGGAAATACCGTCACAATATCTATCGATGTAACTTACCCAACCACAGCGGACTCTCGCCCTGCGACCATATCAGGTATTCCGGTTCCAGGAGTAACAGGAGTAAATTATTGCGGCATTGGTACTGTTCTTAACGGTGCTGCTGCTGGTACTATTGCGGTGGTTAAAGGTGGGGAAAATTTTATAAGACTTTTAACTCCAACCGGCTCCAATACCCTAAACAGTGATTTATCTGGTAAAAATATTTCTATATCACTTACGTATATGTTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
34ffe5bbb5bfbd327f94a6ac530c4f96f51e85760888405c0c770e337f72e847
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7285
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a lytic bacteriophage as an antimicrobial agent for biocontrol of Shiga toxin-producing Escherichia coli O145 strains Liao,Y.-T., Salvador,A., Harden,L., Liu,F., Lavenburg,V., Li,R.W. and Wu,V.C.H. — — GenBank