Protein

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Genbank accession
XHO50633.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MNIVITEHKDHFKPNDHKTYEFVTCATTIREVLQERFEGFVEFDGPTIVVLDGVPRLRKEWDEELVNEGSHLTIAAVPGSGIELIVMAVIAIAAAAYAVYAVNNLPDTSTVERPKAKPVYTLEGESNIAKLGQPIEVPYGRNRWWPSYASRPFTRFQDDNQFLYQLFCLGQGSYENVEVRIEDTLIDNFQEVQWELYPPGTAASMFPDSVVTSNETAGLELFGTNESQHKTYGPFVLNPPNTKTNRIEIDVVMPSGMYYMKDDGGLEYRQASVAFDVQIIDDQGNPQGPWTNIATRTYRYRTTDAIRRTIAVTVASARYQIRGRRINNADTSYRSGNKITWEGTRAVLPSTKLYGNVTLLAVAIRATNNLNSNSSNRINVTATRKIPVFEGGKWVTKGSRSVVWAALDVLRNDDYGAQIPQQYIDMTKMQTLDAYLTSRNIYFDYIFTQKTKVWDALKLILKVARAEPIIMLPLISAFRYEKKSIPAAVFTPDNIEEGSFEWLVNYPDPLDYDGLRVTYVDQVKWKEDVVDCLPPGSDGKRLKAVDLHGCADRNNAYHEGMYMAMSQRRVRETIKFKTGREGFIPVRGDMIALSYPIPRWGDNAWVVDIADDKKTITMDRPLKWTSGAQHVVMLRLDNGQGNGPHNCVQGSATNILILDDPLPNISFSTKIGREPVYALFGVTGEFARYLRVENTEASSNDTVEITSTNYVADLDQFDNATAPASTSGVTVPSVPDLPDIPYVTVSKIPGNYSRVNVYWGSALGAKSYNLQVSYDGGTTYRHVASTDATSYQLILEQTGTIHVRVAAVNVGAGEWKVWTGTVGEATNRPFPVSGLALAFPFVGKTIALQWNPAIDANDYVIEVYSMPGDSLLTTLYNKGVSLNISLAEALSGGYVSRNYKFRVYGRNSKGWSETDAVLDVSNPAPRKLALPTSVQIAETPTTATFRVTWEQLPDDDIVTYRVWGSQTDGFTPSDANKFLEVLGTSGDITVQKVSGVIPTTYGRIAAIDAWGDEYNVSDQFVATTA
Physico‐chemical
properties
protein length:1025 AA
molecular weight: 113904,84770 Da
isoelectric point:5,25877
aromaticity:0,10244
hydropathy:-0,27961

Domains

Domains [InterPro]
DC_0129
STR
1–885
DC_0129 DC_1241
IPR055385
ATT
234–347
IPR055385 IPR053171
NF040662
Unmapped
240–713
NF040662 IPR036116
XHO50633.1
1 1025
Architecture
STR
ATT
STR
ATT
STR 1-233 | ATT 234-347 | STR 348-918 | ATT 919-1025
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XHO50633.1
1 1025
Domain Start End Length (AA) Confidence
N-terminal 1 612 612 0,7667
Central domain 613 848 237 0,0564
C-terminal 849 1025 176 0,0945
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-612
Central
613-848
C-terminal
849-1025

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaS_R29Z
[NCBI] 		3348376 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XHO50633.1 [NCBI]
Genbank nucleotide accession
PQ289635.1 [NCBI]
CDS location
range 47566 -> 50643
strand +
CDS
ATGAATATTGTTATTACCGAGCACAAGGATCATTTTAAACCAAATGACCACAAGACATACGAGTTCGTCACTTGTGCTACCACTATCCGCGAAGTGTTACAGGAACGCTTTGAGGGTTTTGTTGAGTTTGACGGGCCAACTATTGTTGTCCTTGACGGGGTTCCACGCTTGCGTAAAGAGTGGGACGAAGAACTAGTTAACGAGGGTTCGCACCTTACAATAGCAGCCGTTCCTGGATCCGGCATTGAGTTGATTGTAATGGCGGTTATTGCTATTGCTGCCGCTGCTTATGCGGTGTACGCTGTAAACAACCTACCCGACACCTCTACGGTTGAGCGTCCTAAAGCTAAACCTGTGTACACGCTGGAAGGCGAATCCAATATTGCTAAGTTGGGTCAACCAATCGAGGTTCCATACGGTCGAAACCGTTGGTGGCCTTCGTATGCTTCACGTCCATTTACCCGATTCCAAGACGACAACCAATTCTTGTATCAGTTGTTCTGCTTGGGGCAAGGTAGTTACGAAAACGTAGAAGTGCGTATCGAGGATACACTGATTGACAACTTCCAAGAGGTGCAATGGGAATTATATCCTCCGGGCACTGCGGCAAGTATGTTCCCAGATAGTGTGGTCACATCTAACGAAACTGCGGGTCTGGAGTTGTTTGGTACTAACGAAAGTCAGCACAAGACATATGGTCCATTTGTTCTCAACCCGCCAAACACTAAAACCAACCGCATTGAGATAGATGTAGTTATGCCTTCTGGTATGTACTACATGAAGGATGACGGTGGTTTGGAGTACCGACAAGCTTCCGTTGCTTTTGACGTGCAGATTATTGACGATCAGGGTAATCCGCAGGGCCCATGGACTAATATTGCAACTCGAACGTATCGTTACCGCACCACAGACGCAATTCGTAGAACAATTGCTGTAACCGTTGCATCTGCACGTTACCAGATTCGCGGTCGTCGTATCAATAACGCGGATACGTCTTATCGTTCTGGTAACAAAATCACTTGGGAAGGCACTCGTGCGGTGCTACCGTCTACAAAGCTATACGGTAATGTGACATTACTCGCTGTTGCTATTCGTGCAACCAACAACTTGAACAGTAACAGTTCTAACCGAATTAACGTAACCGCAACCCGTAAAATCCCAGTGTTCGAAGGGGGCAAATGGGTCACTAAAGGTTCTCGCTCTGTTGTGTGGGCTGCACTGGATGTACTTCGTAACGACGATTATGGTGCGCAAATCCCGCAGCAATACATCGATATGACAAAGATGCAAACGTTAGATGCTTACCTAACATCCCGCAACATTTACTTTGATTATATCTTTACCCAAAAGACCAAGGTGTGGGATGCACTCAAGTTAATTCTAAAGGTTGCACGTGCAGAACCAATTATCATGTTACCGCTCATTTCAGCGTTTCGCTATGAGAAGAAGAGCATTCCTGCTGCTGTGTTTACACCGGATAACATTGAAGAGGGTTCATTTGAGTGGTTGGTTAACTACCCTGACCCGCTCGACTATGACGGTTTGCGTGTGACATACGTGGATCAGGTTAAGTGGAAGGAAGACGTTGTTGATTGCTTACCTCCAGGGTCAGATGGTAAACGACTCAAAGCTGTTGACTTGCACGGTTGCGCGGATCGCAACAATGCGTATCATGAAGGGATGTACATGGCGATGAGCCAGCGTCGTGTGCGTGAGACAATCAAGTTTAAGACAGGGCGAGAAGGTTTCATTCCTGTGCGTGGGGACATGATTGCGCTGAGCTATCCAATTCCACGTTGGGGTGATAACGCATGGGTTGTTGATATCGCAGATGACAAGAAAACCATTACAATGGATCGTCCACTGAAATGGACAAGCGGCGCGCAACATGTGGTCATGCTACGTCTAGATAACGGTCAGGGCAATGGTCCTCACAACTGTGTGCAAGGCTCTGCAACAAACATTCTGATTTTGGATGACCCACTACCGAACATTTCGTTCTCAACCAAAATCGGACGTGAACCTGTTTACGCGCTATTCGGTGTCACTGGGGAGTTTGCTCGATATCTTCGAGTTGAAAATACTGAAGCAAGCTCTAACGACACGGTTGAGATCACAAGTACCAACTACGTGGCGGACTTGGATCAGTTCGATAACGCAACTGCTCCAGCTAGTACATCGGGAGTCACTGTGCCAAGCGTACCAGATTTGCCAGACATCCCGTATGTAACTGTGAGTAAGATTCCAGGCAACTACAGCCGAGTGAATGTGTATTGGGGTTCCGCGCTTGGTGCTAAGAGCTACAACCTACAGGTGTCTTACGACGGTGGCACAACATATCGCCATGTTGCGAGTACGGACGCAACAAGTTACCAGTTAATTCTAGAGCAAACTGGTACAATTCACGTTCGCGTAGCTGCTGTGAACGTTGGTGCGGGCGAATGGAAGGTGTGGACGGGCACTGTTGGTGAAGCTACTAACAGACCGTTCCCTGTTAGTGGTTTAGCACTGGCGTTCCCGTTTGTAGGTAAAACCATTGCACTTCAGTGGAACCCTGCAATCGACGCGAACGATTATGTCATTGAGGTTTACAGTATGCCTGGAGATAGCTTGCTGACCACGCTATATAACAAGGGTGTGTCGCTTAATATCTCACTTGCTGAGGCACTTAGCGGGGGTTATGTTTCGCGTAATTACAAATTCCGAGTTTACGGTCGTAACTCTAAAGGTTGGAGTGAAACTGATGCGGTATTGGATGTATCCAACCCCGCACCACGGAAACTAGCGTTACCAACATCCGTCCAGATTGCGGAGACACCTACCACAGCAACGTTCCGCGTTACTTGGGAGCAATTACCAGACGACGATATTGTGACTTATCGTGTATGGGGTTCTCAAACGGATGGGTTCACACCTAGCGATGCAAACAAGTTCTTAGAGGTGCTTGGTACAAGCGGTGATATTACGGTACAGAAAGTTTCTGGTGTGATTCCAACCACATACGGGCGCATTGCAGCTATTGACGCATGGGGTGACGAGTACAACGTTAGTGATCAGTTTGTTGCCACTACTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8386693a1bffd1d959f66e405ce002a7811800c7ef2e8c56306107a7eb6b7643
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8632
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50