Protein

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Genbank accession
AHB79440.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MATETVRYFQIKNIDIWCNEAPIGDRPVGIYIPSATNYSTENINFRGCLYDIWCKNAWRGTHKDIRGNDTISHSCFYDGTRTNAEGVPIADAQSATSLLFDGYYANSPGGSGFYLNGVDYSNFAMAAVDHATLASYTFINSNVTGTLGAEYATVEYINVDGGVVDAYLSTYDDTTDNTNYVAVVKGTTGAIVKLCGRFRTQKYRLANVTGSDNVVEIDISNYWNGSSKGVPQSVCTIGNYLDVKLGIGGAIRRYRDGVLQEGRASAPSYTTTPSATGSPYSSPILSWYG
Physico‐chemical
properties
protein length:289 AA
molecular weight: 31345,27150 Da
isoelectric point:5,05500
aromaticity:0,12111
hydropathy:-0,24913

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AHB79440.1
1 289
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0038
Central domain 11 254 245 0,9911
C-terminal 255 289 34 0,8677
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-254
C-terminal
255-289

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage pSb-1
[NCBI] 		1414738 Uroviricota > Caudoviricetes > Schitoviridae > Gamaleyavirus > Gamaleyavirus Sb1
Host Shigella boydii
[NCBI] 		621 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AHB79440.1 [NCBI]
Genbank nucleotide accession
KF620435 [NCBI]
CDS location
range 16101 -> 16970
strand -
CDS
ATGGCCACTGAGACCGTGCGTTACTTCCAAATTAAGAACATAGATATTTGGTGTAACGAGGCTCCCATTGGTGACCGTCCAGTTGGTATTTACATCCCAAGTGCTACTAATTACAGCACAGAGAATATAAATTTCCGTGGATGTTTATATGATATCTGGTGTAAGAATGCATGGCGTGGAACACACAAAGACATTCGTGGCAATGATACTATTTCCCACTCTTGCTTCTATGATGGTACACGTACAAATGCTGAAGGAGTACCTATTGCAGATGCACAATCCGCTACCAGTCTACTGTTTGATGGGTACTACGCTAATTCACCGGGTGGTTCTGGTTTTTATTTGAACGGCGTAGACTACTCAAACTTTGCTATGGCTGCTGTAGACCATGCTACGTTAGCTTCTTATACATTTATCAATTCTAATGTTACAGGTACGTTAGGTGCAGAATACGCTACGGTAGAATACATCAACGTTGATGGTGGGGTAGTTGATGCCTACCTTAGTACTTACGATGATACTACTGATAATACTAACTATGTTGCTGTAGTGAAGGGTACTACCGGGGCTATTGTTAAGCTATGTGGTCGTTTCAGGACTCAGAAGTACCGACTTGCTAATGTCACTGGTTCGGATAATGTTGTAGAAATCGATATTAGTAATTATTGGAATGGTTCTTCTAAAGGTGTTCCACAATCAGTATGTACTATTGGTAATTATCTTGATGTAAAACTTGGTATCGGTGGGGCAATTCGTAGATACAGGGATGGTGTTTTGCAGGAAGGAAGAGCATCGGCTCCCTCTTATACTACTACTCCAAGTGCTACAGGTTCCCCATACTCATCCCCTATTCTAAGTTGGTATGGCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d7ab744bf46288046305373816aa59e2fb5973c316b60e6c536630e43d3e5e19
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7979
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genome sequence of a novel N4-like bacteriophage, pSb-1 infecting Shigella boydii Jun,J.W., Yun,S.K., Kim,H.J., Chai,J.Y. and Park,S.C. 2014 25283727 GenBank