Protein

View in Explore

Genbank accession

YP_009188996.1 [GenBank]

Protein name

tail fiber protein; Ig-domain containing

RBP type

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

Evidence RBPdetect

Probability 0,89

Protein sequence

MAKPKDPIYVWAAADVNLPGTGRPNKSKPIDDLLAKGYDKGQKPAAEEFNYILNMSSAWVNWIVNEKFPELEAEIARLLAELENRINQQLAVIRQDIAQLKQDVADLRRYVDQKVQELKQEIQGVRNDLNKLRQDFDAAIAQVNGRIDDLEPRLVPIGAVIPWPGATVPNGWLECNGQVFNTGTNPKLYGVLGRNVVPDYRGLFLRGWAHGSGANDPDAGRALGSVQGDAIRNMTGYFPADIGQSGWIGRYVGGVFRDDGALTSGDQGSRSGEVRKYSFDASRQVPTAPENRPKNVAVMYIIKTDQAQSSGGNSPTAIVVSPDTITNRVGYTVKATASVLPASIAGQYPVSWSTQNAAVATVDGSGNIRLVGPGETNIIASISTGMNVAIRVTSYSVLTSISIADPGQIPVTESKMLVVNKNPGGANEPLQFLSNNSGVATVNDAGYVTGVSAGNATITVRGTLSGVSATRSVTIIPEQVEESVQDNRLGAVGSYIPPGNEISWTFQAPQGCALTGIIVQDTGSNSGDNIGGVYYKPIQKKVNGVWVTITG

Physico‐chemical properties

protein length:	551 AA
molecular weight:	58680,20040 Da
isoelectric point:	5,58417
aromaticity:	0,06715
hydropathy:	-0,23412

Domains

Domains [InterPro]

DC_0413
STR
1–530

DC_0413

SSF58113
STR
41–156

SSF58113 IPR011083 G3DSA:2.60.40.1080 IPR003343

Coil
Unmapped
68–142

Coil IPR051934 IPR003343 G3DSA:2.60.40.1080

G3DSA:1.20.58.130
Unmapped
88–154

G3DSA:1.20.58.130 SSF88874 IPR008964 IPR003343

IPR037053
ATT
155–206

IPR037053 IPR003343 IPR008964

YP_009188996.1

1 551

Architecture

STR

ATT

STR

STR 1-154 | ATT 155-206 | STR 207-530 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0413	STR	DC_0413	1	530	Novel HMM	DC_0413	Central	Low	Positional only	85 proteins / 85 hits
SSF58113	STR	SSF58113	41	156	Merged direct domain	SSF58113	Central	Low	Positional only	3 proteins / 3 hits
Coil	Unmapped	-	68	142	Coils	Coil	-	-	-	-
G3DSA:1.20.58.130	Unmapped	-	88	154	Gene3D	None	-	-	-	-
IPR051934	Unmapped	-	149	239	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
SSF88874	STR	SSF88874	154	303	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	155	206	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	158	204	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	314	395	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR003343	STR	DC_0008	314	392	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR008964	RBD	IPR008964	316	392	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR003343	STR	DC_0008	316	380	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR003343	STR	DC_0008	397	474	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	398	476	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR003343	STR	DC_0008	409	460	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR008964	RBD	IPR008964	414	470	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Cronobacter phage PBES 02 [NCBI]	1684115	Uroviricota > Caudoviricetes > Vequintavirinae > Certrevirus PBES02 >
Host	Cronobacter sp. [NCBI]	1888169	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

YP_009188996.1 [NCBI]

Genbank nucleotide accession

NC_028672.1 [NCBI]

CDS location

range 80397 -> 82052
strand +

CDS

ATGGCTAAACCAAAGGACCCTATTTACGTTTGGGCTGCTGCCGACGTAAACCTTCCAGGCACGGGTCGTCCTAACAAATCAAAGCCTATTGACGACTTGCTCGCCAAGGGCTATGATAAAGGACAAAAGCCAGCAGCAGAAGAGTTCAACTATATCCTGAATATGTCCTCTGCCTGGGTTAACTGGATCGTCAACGAGAAGTTCCCAGAGCTTGAGGCAGAAATCGCCCGGCTCTTGGCAGAACTTGAAAACCGCATCAACCAGCAGTTGGCTGTTATCCGTCAGGATATTGCCCAACTGAAGCAAGATGTCGCAGACCTTCGTCGGTATGTCGATCAGAAGGTTCAGGAACTGAAACAAGAGATCCAAGGCGTCCGAAACGACCTGAACAAACTGCGTCAAGACTTTGATGCTGCGATTGCTCAAGTCAACGGACGAATTGATGATCTTGAGCCACGTCTTGTTCCAATCGGTGCCGTTATCCCTTGGCCTGGGGCTACAGTCCCTAATGGTTGGTTGGAGTGTAACGGTCAGGTGTTTAATACCGGGACAAACCCTAAGCTGTATGGAGTTCTGGGTCGTAACGTTGTTCCTGACTACCGTGGTCTCTTCCTGCGCGGCTGGGCACACGGCTCTGGCGCTAATGATCCAGATGCAGGCCGTGCCCTTGGTTCTGTGCAGGGTGACGCGATCCGAAACATGACGGGTTACTTCCCTGCGGACATCGGTCAGTCTGGCTGGATCGGTCGTTACGTTGGTGGTGTGTTCCGTGACGATGGCGCACTGACCTCTGGTGACCAAGGTTCTCGTAGTGGTGAAGTGCGTAAGTATAGCTTCGATGCTTCCCGCCAAGTTCCAACGGCCCCGGAAAACCGTCCGAAGAACGTCGCGGTTATGTACATTATCAAGACTGACCAGGCACAATCCTCCGGAGGCAACTCACCAACGGCGATCGTCGTCTCTCCAGACACAATCACCAACCGTGTAGGATACACCGTCAAAGCGACTGCGAGTGTACTCCCTGCTTCCATCGCAGGTCAATACCCTGTATCCTGGTCTACTCAAAATGCTGCGGTGGCAACGGTTGATGGCTCTGGCAACATCCGCCTTGTAGGTCCGGGTGAAACCAACATCATCGCTTCCATCTCCACGGGGATGAACGTAGCGATCCGTGTTACGAGCTACTCTGTTCTGACCAGCATCTCCATTGCTGATCCGGGCCAGATTCCGGTCACAGAGTCGAAGATGCTTGTTGTTAACAAAAACCCAGGGGGTGCGAACGAACCTCTGCAATTCCTGTCAAATAACTCCGGTGTTGCGACTGTGAACGATGCAGGTTACGTAACAGGTGTTTCTGCTGGGAATGCAACCATCACGGTACGGGGTACTCTCTCTGGTGTTTCTGCGACACGTTCAGTGACAATTATCCCTGAGCAGGTTGAAGAGAGCGTACAGGACAACCGTCTCGGTGCGGTAGGATCTTACATCCCGCCCGGCAACGAAATCAGTTGGACTTTCCAAGCCCCTCAAGGTTGTGCTCTGACAGGTATCATCGTACAAGACACCGGGTCAAACTCCGGCGACAACATCGGTGGTGTTTATTATAAGCCGATCCAGAAGAAAGTTAACGGCGTCTGGGTCACGATCACGGGGTAA

Genome Context

Tertiary structure

PDB ID

c0d8da220961f50cf3cd4147ac62faf8c2c7d8b1ecd7671ee79e75b9ce62d8f4

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,8249

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Complete genome of Cronobacter phage PBES 02	Myung,H.	2016-09-28	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature