Protein

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Genbank accession
QAY01958.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MPTPSGLVTKQELIDAQLDTAHLGRVVNSKDAAGNPISQSTNRTGGVNATLNALLGAIGLYSVGFWTDDPTLTEVNQYVRDNSTGLDYQPVTLPYTVNSALNPDPETLVTSGVLNRVNEVTQQDLIDQLGLLVGGSVYPGDDGAYVKNEDTVPSGTTHLIVQVSGVKTLVAMSPVASGAVSMLADDSAVIGGVTVALIPPNVTAIDKASALLTPFSTGTIVEVASCNFARFISVIASDTGGLYLGTLPNGNKLRHIPKAGTLLKMVSTSDFDIVQDADISQFLIDATSAGYGHIEIDNDYAVNQNVDTTGVKYLISNQGSQITVDDALGRIKNDTDGFEARGITFNKSGSYSDTTFEAYLLETNGEDVIVERCRFLGQWAGYKLQGNNSTVDLCFFSDGTFMLRVGEGVVSCKINGSFFTRGTRQYTEGGEQGDGIKITAQSAAQGYNENIIISNNIFYNVYRDCIDGYTGASRMIISGNMMINWGAHAMDIKSRVDDNVETPDGGPLARDILIEGNMIWKGVVRPDFDLTLAAVVMSVIPGTLPLPTSEADVRDKGLRGMEFRNNRLAYIGNGGFISATSTWRTVIENNTFTDLGQIGQVIYAPNCWHMKFNDNTVNIDPSNVNNVDFSLSMNQAEIKDNTFNRLLIATDGMTNIDLKSNKFNGQGALSRGLNIASEGVSAVDNKFDNFTSFGAQIFNAASKCRFDFNEIRNCPAPLGIENPSVNTYHSVRGNISMGSGAFTGLNRITDNGGVASMNDHVAYV
Physico‐chemical
properties
protein length:764 AA
molecular weight: 81872,58460 Da
isoelectric point:4,61757
aromaticity:0,07723
hydropathy:-0,11688

Domains

Domains [InterPro]
DC_0194
STR
9–764
DC_0194
IPR012334
STR
257–527
IPR012334
IPR011050
STR
339–521
IPR011050
QAY01958.1
1 764
Architecture
STR
STR 9-764
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QAY01958.1
1 764
Domain Start End Length (AA) Confidence
N-terminal 1 278 278 0,9967
Central domain 279 747 470 0,9851
C-terminal 748 764 16 0,7922
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-278
Central
279-747
C-terminal
748-764

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VpaJT_1
[NCBI] 		2484247 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QAY01958.1 [NCBI]
Genbank nucleotide accession
MH925092.1 [NCBI]
CDS location
range 18782 -> 21076
strand +
CDS
ATGCCAACTCCATCAGGGCTTGTAACGAAGCAAGAACTTATCGACGCTCAGCTCGATACCGCGCACCTCGGTCGCGTCGTCAATTCTAAGGACGCTGCGGGTAATCCGATCTCCCAAAGTACGAACCGCACCGGCGGAGTGAACGCAACTCTTAACGCGTTGCTCGGCGCAATCGGCCTGTACTCTGTCGGATTCTGGACAGACGACCCAACGCTTACCGAAGTGAATCAATATGTCCGAGACAACTCGACCGGACTGGACTATCAACCCGTCACGCTGCCTTACACGGTGAACAGCGCGTTAAACCCCGACCCCGAAACGCTCGTCACGTCCGGCGTGTTGAACCGCGTGAACGAAGTTACACAGCAAGACCTTATCGACCAGCTAGGGCTTTTAGTCGGCGGGAGCGTTTATCCTGGCGACGACGGTGCGTACGTTAAGAACGAGGATACTGTCCCGAGCGGTACGACGCATTTGATTGTGCAGGTTAGTGGGGTTAAGACTTTAGTCGCGATGTCGCCCGTAGCGAGTGGCGCTGTGTCAATGTTAGCTGACGATTCGGCAGTTATAGGGGGTGTGACGGTAGCGCTAATCCCACCTAACGTAACCGCTATAGACAAAGCCTCCGCTCTCCTAACACCTTTCTCAACGGGGACAATTGTTGAGGTGGCTTCCTGCAATTTCGCAAGGTTCATTTCCGTCATTGCATCGGATACCGGTGGACTATATCTCGGCACACTGCCGAACGGGAATAAACTTCGCCACATCCCGAAAGCTGGAACACTGTTAAAAATGGTGAGCACCTCGGATTTTGACATTGTTCAAGACGCGGATATTTCTCAGTTTCTCATTGATGCGACGTCGGCAGGTTACGGTCACATAGAGATCGATAATGATTATGCGGTCAATCAAAACGTCGACACTACAGGCGTGAAATATCTAATAAGTAACCAAGGATCACAAATTACAGTAGATGACGCGCTCGGTAGGATAAAGAACGACACTGACGGTTTCGAGGCGAGAGGGATAACATTCAATAAGTCGGGTAGCTACTCAGACACCACGTTTGAAGCGTATTTGTTAGAAACGAACGGCGAAGACGTTATTGTTGAGCGATGCAGGTTTCTAGGCCAATGGGCTGGATACAAACTCCAAGGGAATAACTCAACCGTGGATTTGTGTTTCTTCTCAGACGGAACGTTCATGTTAAGAGTCGGGGAAGGCGTTGTAAGTTGTAAGATAAACGGTAGCTTCTTCACTAGAGGTACGCGTCAGTACACTGAAGGGGGAGAACAAGGTGACGGTATTAAGATAACTGCTCAAAGTGCCGCTCAAGGTTACAACGAGAATATAATTATTAGTAATAATATCTTCTACAATGTTTACCGAGATTGTATAGATGGTTACACGGGTGCTAGTAGGATGATTATCTCTGGTAACATGATGATCAACTGGGGTGCTCACGCTATGGATATTAAGTCTAGAGTCGATGACAACGTAGAGACACCTGACGGCGGACCTCTAGCACGAGACATATTGATAGAAGGCAACATGATATGGAAAGGCGTGGTTCGACCTGACTTCGACTTAACCCTAGCCGCTGTGGTTATGAGCGTCATACCAGGCACGTTACCACTACCAACGTCTGAAGCGGACGTACGGGATAAAGGCTTGCGAGGCATGGAGTTCCGCAACAACCGCCTCGCATATATAGGCAACGGGGGCTTCATTAGTGCCACTAGTACGTGGCGTACTGTTATTGAAAACAACACATTTACGGACTTAGGTCAGATAGGTCAGGTTATCTACGCCCCTAACTGCTGGCATATGAAGTTTAATGACAACACCGTTAATATTGACCCTTCAAATGTTAATAATGTTGATTTCTCATTGTCTATGAATCAAGCGGAGATCAAGGACAATACGTTCAATAGATTGCTTATTGCAACAGATGGTATGACCAACATAGACCTAAAGAGTAACAAGTTTAACGGTCAAGGGGCACTCAGTCGAGGTCTTAACATTGCCTCCGAAGGTGTTAGTGCGGTAGACAATAAGTTCGATAACTTTACGTCATTCGGTGCTCAGATATTTAACGCCGCTAGTAAATGTCGATTCGATTTCAATGAAATACGAAACTGTCCGGCACCGCTAGGGATAGAGAATCCTTCAGTGAACACATACCACAGTGTTAGAGGTAATATAAGCATGGGAAGTGGTGCGTTTACAGGCCTTAACCGGATAACGGATAACGGCGGTGTAGCTAGTATGAACGACCATGTGGCCTACGTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
7bc4afe34976b6b2fc6c31bda7d94226f8d8def092acfa544ebf653768e2d46d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7794
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genomic analysis of VpaJT_1 Chen,L. 2024-12-16 — GenBank