Protein

View in Explore
Genbank accession
QJQ82609.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,90
Protein sequence
MSIKLKGSTDGSVSINAPADTSPTGSDITLTLPTTVGSANQFVKNGGTAGELKYSSMVEDSSGRLLVGDSSDSSDSLLIVQGNAGDSGTGGQISIQRGGNANPTAPSDLGSLIFKDSAASRGAVIGAVCDNDWASNDFPTRLEFKVTKDNASSPTERMRISSTGDLFTVHDDNGVVSRSTLSAGTSNTVFIGQHNASSITAGTNSCKIFTNGNIQNSNNSYSQLSDVKLKENIVDANSQWDDLKAIQIRNWNFKAETGYETHTQIGVVAQEIETVSPGLVYETPDRETVQISVLDKNGEVVLDENGEAVVTTEERDLGTVTKSVNYSVLYMKAVKALQEAQTRIETLETKVAALETAE
Physico‐chemical
properties
protein length:358 AA
molecular weight: 37805,04210 Da
isoelectric point:4,58505
aromaticity:0,04749
hydropathy:-0,35838

Domains

Domains [InterPro]
DC_0421
STR
2–358
DC_0421
IPR030392
CHP
225–351
IPR030392
IPR030392
CHP
225–280
IPR030392 Coil
QJQ82609.1
1 358
Architecture
STR
STR 2-358
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QJQ82609.1
1 358
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0077
Central domain 11 209 200 0,0306
C-terminal 210 358 148 0,9984
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-358

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SBP1
[NCBI] 		2735125 Uroviricota > Caudoviricetes > Autographivirales > Spiovirus > Spiovirus sbp1
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QJQ82609.1 [NCBI]
Genbank nucleotide accession
MT424636.1 [NCBI]
CDS location
range 36999 -> 38075
strand +
CDS
ATGAGTATTAAACTAAAAGGAAGTACAGACGGGAGCGTGTCAATCAATGCTCCCGCCGATACCAGCCCGACTGGTAGCGATATTACGCTGACCCTGCCTACCACGGTAGGGTCTGCTAATCAATTTGTTAAAAACGGTGGTACTGCTGGTGAGCTGAAGTATTCCAGCATGGTCGAAGACAGCTCGGGGCGGTTGTTGGTGGGAGACAGTAGTGATTCTTCTGACTCCTTGTTAATTGTTCAAGGAAATGCTGGGGATTCAGGTACTGGCGGACAGATTTCAATACAAAGAGGTGGAAACGCAAATCCGACGGCACCTAGCGACCTTGGCAGCCTTATATTCAAAGATTCTGCAGCAAGCCGAGGTGCTGTAATTGGTGCCGTCTGTGACAATGACTGGGCAAGTAATGACTTCCCAACTCGCCTGGAATTTAAAGTTACAAAGGACAATGCAAGTAGCCCGACCGAGCGGATGCGTATTTCAAGCACGGGTGACCTGTTTACTGTCCATGATGACAATGGGGTCGTATCTAGATCAACTCTTTCTGCTGGAACCAGTAATACTGTTTTTATTGGTCAACATAATGCAAGTAGCATTACTGCTGGCACAAATTCTTGCAAGATTTTCACCAACGGAAACATTCAGAATTCAAACAACTCTTATTCTCAGCTTTCCGATGTCAAGTTAAAAGAGAATATCGTTGACGCAAACTCGCAATGGGATGATTTAAAAGCCATTCAAATTCGTAATTGGAACTTTAAAGCAGAAACTGGGTATGAAACACACACTCAAATTGGTGTCGTAGCTCAAGAAATTGAAACTGTATCGCCTGGTCTCGTTTACGAAACACCCGACCGTGAAACCGTCCAAATTTCTGTTTTGGATAAAAACGGGGAAGTGGTACTGGATGAAAATGGAGAAGCAGTCGTTACTACTGAAGAGCGTGATCTTGGGACGGTCACTAAGTCCGTCAACTACTCGGTGCTCTATATGAAAGCCGTAAAGGCTTTGCAGGAAGCGCAGACTAGGATTGAAACGCTTGAAACCAAAGTCGCCGCATTGGAGACAGCAGAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a6be3500be0d70b53389382178eebcce467ff16e39381e61899be98278aa1dde
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7498
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Programmed transcriptomes of a marine cyanopodovirus and its Synechococcus host during infection Huang,S. 2020-12-30 — GenBank