Protein

View in Explore
Genbank accession
ASZ76548.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,75
Protein sequence
MSTYKVFNAAGKIVEYGYYDAGRGYLDIHPDGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGVLVPNDTFSLVSAWTNTDVDLSGGGYQVVSVSEGTVTFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSAPYGPIYTAQGTVSGRTPDYNGVTIYADLPVVSRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTRTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQKEIEDYFGDKQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRKGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNVKETITIPETGGVKTETYDSKGIRNYKQAFWAANRRHQKNILKKISVSFTATEEGIFALPNRAISVVKGSRMATYDGYITAVNGLTVELSQPVKFTAGDDHSLILKLRDGGVQSVNVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSNGFDNGFN
Physico‐chemical
properties
protein length:709 AA
molecular weight: 78128,35190 Da
isoelectric point:5,26172
aromaticity:0,10296
hydropathy:-0,37264

Domains

Domains [InterPro]
DC_0016
STR
7–709
DC_0016
NF040662
Unmapped
209–689
NF040662
ASZ76548.1
1 709
Architecture
STR
STR 7-709
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ASZ76548.1
1 709
Domain Start End Length (AA) Confidence
N-terminal 1 74 74 0,9055
Central domain 75 284 211 0,7182
C-terminal 285 709 424 0,1743
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-74
Central
75-284
C-terminal
285-709

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SG2
[NCBI] 		2025811 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella gallinarum
[NCBI] 		594 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ASZ76548.1 [NCBI]
Genbank nucleotide accession
MF001356.1 [NCBI]
CDS location
range 2968 -> 5097
strand +
CDS
ATGTCTACTTATAAGGTGTTTAACGCCGCTGGTAAAATTGTAGAGTACGGCTACTACGACGCCGGGCGCGGCTACCTCGACATCCACCCGGACGGTATAACGGACGGGGATACCCGTGTATCAGATATAACAGGTACGTCGGTTGCCGTGTACGCGCCGTATACGTCACCAAATAATACATCCACACCACAGGTCATGGTTGGCGACCCGATAGAGCAAGGCCTGTACATCACCGTAGAATCTAACGAAGTAGACGGCGTGGTTCTGAAAGCACCTAACGGCCTGGGTATTTCTTTCTCTTACATGTCAGGGTATCCGTCTTTGTCAGGAAACATTGGCACTATATACGACCCAACAGGCGGCTCGGATTTTTCTGGAGTACTGGTGCCTAATGACACGTTTTCGCTGGTGTCCGCGTGGACAAATACAGACGTTGACCTGTCCGGCGGCGGGTATCAGGTAGTCAGCGTGTCCGAAGGGACTGTTACCTTTATAGTACCTGGCGGTCTCATTGGTAGGTGGCAAGAAATAAGACCGGGTTCCTTTTTCCGTGGTGACGGAGAGGCCTCGCTGCAACCAGACAACACGTATGAGAAAACTTTAACCGATTGGGTTTCAATAAACCGTACCGAAGTAGAGCGCATTGTAGCCAATATCGCCGCCGCGAATGGTATGTATAAAGACAACGGCAAATCGAAAACACTGGCGTCGGTCACCGCTGAGATACAGTACCAGTTACTTGATGAAAATAGTGCCCCTTACGGGCCGATATACACTGCGCAAGGAACCGTGTCCGGACGCACCCCGGACTACAACGGAGTCACTATCTATGCCGATCTGCCGGTTGTATCTCGTGTAAGGGTTAGGGCCCGTAGGGTTACGGACCTTGACTTCAATTTTGAAGGGTCTGTAGTCGATGAAATAACGTATGTGAACCTGTATGGACAGACGCGAGATAACACCCCGCACTACGGCAACAGAACAACCGTACACTCGATGCGCAAGCAGACACCGCGCGCTGCGGAGGTTAAGCAACCGCAGTTGCGTATGATTGCCACCGAAATGGTATACAAATACCTCGGTAATGGTGTTTTCGAAGACACGAGGACCCCTAATACTCAGGCTGTGCAATCTCTTATCCGCCTGGCACGTGACCCAGATGTGGGTGGCTTAAACCTGACAGTGCGAAACATGGACAAGTTACTTGCCGTTCAGAAAGAGATTGAAGATTATTTCGGCGACAAGCAAGCGGGGGAATTTTGCTACACGTTCGATGACTATAAAACCACTATGCAGGACATAGTTAGTACTATAGCTGACGCTATATTCTGCACCCCATATCGGAAAGGGGCGGATATCCTTCTTGATTTTGAACGCCCTCGCATGGGCCCGGAGATGGTGTTCACCCACCGAAGCAAGGCCGGTACTTCTGAAAAATGGACAAGGACATTTAACGATGCTCAGGTGTTCGATAGTCTTAAATTCTCGTACATAGACCCAAAAACAAACGTTAAAGAAACAATAACAATACCTGAAACTGGTGGGGTTAAAACGGAGACTTATGACTCTAAAGGTATTCGCAACTATAAGCAGGCTTTCTGGGCCGCTAATCGCCGTCACCAGAAGAACATTTTAAAGAAAATTTCAGTGTCGTTTACCGCCACGGAAGAGGGTATCTTTGCTTTGCCAAATCGTGCCATTAGTGTCGTTAAGGGCTCACGTATGGCTACCTACGATGGCTACATAACCGCAGTAAACGGGCTCACCGTAGAACTATCGCAACCGGTTAAGTTCACAGCGGGAGATGACCATTCTTTGATTCTCAAGTTACGTGATGGTGGAGTGCAAAGTGTTAATGTAGTCCCTGGAGCGCACGACAGGCAGGTGATTATGACATCAGTGCCGCAAGAAGCCATTTACACAGGTAATAGTGCTTTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGACCCCGGCGATGACAGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTCGACAACGTGCCTCCTTTCGGTCGTGCGTTCTCCAACGGATTCGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2559249ef351ff29016b91ad0a8ee32bd58b2df2ab4591dfbe0d5f6987b6932a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8556
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Lytic Bacteriophage SG2 Infecting Salmonella Gallinarum Isolates Kim,D., Kim,Y.J., Han,B.K. and Kim,H. 2012-09-15 — GenBank