Protein

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Genbank accession
WKV17068.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MTVEVASFITDMNITYPRNGDLIKEGDDHMRLIKRIIQQTFAGFNSYVTISSTSMNNMDKNFKYASDSTDIGGSVFFNGSQKTINFNKNGVGTNRNIVTGIPLPRDGSAGLTDAVSRDYLENQGGAGRAVWPVGSIYISATDSNPASTLGFGSWTQFAPGRVLMGVGAGNDGSDTVNIQSPLTQGGKYYHQLTVGEMPAHAHGHDIGGTAISNGAHQHGLQMGVSTASPEGKGDWDAARMDWGSRGTTTVAGAHEHALRITGGIFSQGGNQKHNNIQPFITVYMWRRIS
Physico‐chemical
properties
protein length:289 AA
molecular weight: 30888,90930 Da
isoelectric point:6,79234
aromaticity:0,08304
hydropathy:-0,39239

Domains

Domains [InterPro]
DC_0383
STR
4–289
DC_0383
IPR053827
ATT
129–288
IPR053827
SSF88874
STR
130–287
SSF88874
WKV17068.1
1 289
Architecture
STR
ATT
STR 4-128 | ATT 129-289
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WKV17068.1
1 289
Domain Start End Length (AA) Confidence
N-terminal 1 78 78 0,9020
Central domain 79 277 200 0,0699
C-terminal 278 289 11 0,9978
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-78
Central
79-277
C-terminal
278-289

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PKM.Hi.22.6
[NCBI] 		3061950 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WKV17068.1 [NCBI]
Genbank nucleotide accession
OR053651 [NCBI]
CDS location
range 21668 -> 22537
strand +
CDS
ATGACTGTAGAAGTCGCTTCGTTTATCACCGACATGAACATCACGTATCCTCGAAACGGTGACTTGATTAAAGAGGGTGATGACCACATGCGTCTCATTAAGCGTATTATTCAGCAGACATTTGCTGGATTTAATAGCTATGTGACCATTTCTTCTACATCCATGAACAACATGGATAAGAACTTTAAATATGCAAGTGATTCCACTGATATTGGTGGTTCTGTGTTCTTCAACGGCTCACAGAAGACAATCAACTTCAACAAGAATGGTGTTGGTACAAACCGTAATATAGTTACTGGTATTCCACTCCCTCGCGATGGTTCTGCTGGTTTAACAGATGCTGTAAGCCGTGATTACCTTGAAAACCAAGGTGGTGCAGGTCGTGCAGTATGGCCAGTTGGTTCAATTTACATCTCAGCAACCGATTCTAACCCAGCCTCAACTCTTGGTTTTGGCTCTTGGACTCAGTTTGCTCCAGGTCGTGTTTTGATGGGTGTTGGTGCAGGTAATGATGGTTCAGATACAGTGAACATTCAATCCCCCCTGACTCAGGGTGGTAAATACTACCATCAATTGACGGTTGGTGAGATGCCTGCTCATGCTCATGGTCATGATATTGGCGGTACAGCTATCTCCAATGGAGCACACCAACATGGTTTACAGATGGGTGTAAGTACAGCTTCACCTGAAGGTAAGGGTGACTGGGATGCTGCTCGAATGGATTGGGGTAGTCGTGGTACTACCACTGTTGCTGGTGCTCATGAACACGCATTGCGTATTACTGGTGGTATCTTCTCTCAAGGTGGTAACCAGAAGCACAACAACATTCAGCCATTCATTACTGTATACATGTGGCGTCGCATTTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5e4cfb6db6e400928517da945c01789200751bdf22f0a328aa2939672b953c75
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6501
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Characterization of Novel Plasmid-specific Phages Infecting Bacteria Carrying Diverse Conjugative Plasmids Parra,B., Cockx,B., Lutz,V.T., Bronsted,L., Smets,B.F. and Dechesne,A. 2024-01-11 — GenBank