Protein

View in Explore
Genbank accession
YP_004323170.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,82
Protein sequence
MSLTRLKNIITSRTGRIIYVNPDDFDASDAIDNRGNSALRPFKSLQRAFLEVARFSYRVGLSNDEFDAFSIMLYPAEYIVDNRPGDVLYTNVAPIDANSNLDLTSPNNVLYKYNSVEGGIIVPRGCSLVGTDLRRTKIIPKYVPYPTTYAAKGINTEDQVPPRTAIFKVTGGTYFWQFSFFDGAEEGVYFKPDSTETLAPKFSHHRLTCFEFADGLNPLSTLISQGTVPSADYSAVSNILQRTDLEIYYQKVSKAFATIPDTSGDPATDQIQARVEENRIVGPISDEYRVLQITRNGQTATAVTVDEFDNPRDHGFSVGVNINVSGVTGSTGSQSDLDAGVYNGSFTVTSASGNVFTYQMQSVPSGNAVGSNITVKTEIDTVDSASPYAFNLSLRSVWGMNGMHANGAKATGFKSMVVAQFTGLSLQKDDRAFVRYNASTGNYDVATAGDGAHLDGFAEYRKGWGHEHIKCSNDSFIQAVSVFAVGYQGHFTALSGGDMSITNSNSNFGNTALRSAGFKAKAFSKDKAGTITHIIPPKALNTISTTATGTNGSLNITLANDGSVNGLIQGMTVSGTNIATGAIVSSINTNTRVITLSAANTGTVNGNVIFGEETSVNWVNIDIQRTKVINTALSGQGGTPGTRLYLYGYTVEASPPTSRVQGFTVGARQDGTGNSAIADKINCLLVAQGASSATVQSASISPYGPSVSGLAAGVTGSPLQYDSNTYTINGVAGSVGGWYLSVSSTNNSIYEALANNTQYNTVSFTPTTFLKRIPDPRDLQDRTYRVRYVIDKDKTNPLPRDPISGFVLQPLNSDTTTYNLQRAFYIYDIETVQKFERGVSDGIYYLTLLCGSIAPTTSNFDDRKFSQNVNEVYPTFDRDNPVADPPAAVSEASNVTIGLVNSTDGATPTAALDPQRSITKEAIIFLLTDTGWQNPGSTPAYDSVNGRLAGIELTARAGDEETRKINIRQDNSGVVAPINVEFRRHSIMRSGNHTFEYLGFGPGNYSTAFPQTQVETLSPEQIRFSQSIKEEGGVAFYSGLNSNGDLFIGNQVINPVTGQITNEDIAQLNVVGEENTTIETFSELVLTDKLTVIGGASNALESIFAGPVTFQGQSTFTNNITAKKFTYNNQDGTVIKQTLLAPENASGLPDFSNITGYDTPGDGDIVYNINWSPGKSLGWIYYGAAWYEFGITDTGQINVINDSGVTRIGLGVAPTSPYRANINGSVRIDGDLVVTGTGGVTAAKYKKKQYTGDGNQLTFAVSTYTGGIQHTENSLIVFLNGVAQIPGTNYTVDSNGANVVFSGGDAPLSTDIVHILELPI
Physico‐chemical
properties
protein length:1320 AA
molecular weight: 141410,00930 Da
isoelectric point:4,98793
aromaticity:0,09318
hydropathy:-0,22182

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004323170.1
1 1320
Domain Start End Length (AA) Confidence
N-terminal 1 81 81 0,9363
Central domain 82 311 231 0,9687
C-terminal 312 1320 1008 0,0919
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-81
Central
82-311
C-terminal
312-1320

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-RSM4
[NCBI] 		444862 Uroviricota > Caudoviricetes > Pantevenvirales > Thaumasvirus > Thaumasvirus stim4
Host Prochlorococcus marinus str. MIT 9303
[NCBI] 		59922 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004323170.1 [NCBI]
Genbank nucleotide accession
NC_015283 [NCBI]
CDS location
range 26471 -> 30433
strand +
CDS
ATGTCACTAACTAGACTAAAGAATATTATTACGTCCAGAACTGGACGTATCATATATGTCAACCCTGACGATTTCGATGCATCAGATGCTATTGATAACAGGGGAAACTCTGCTTTGCGTCCGTTTAAAAGTTTGCAAAGAGCATTCTTAGAAGTAGCAAGATTTTCATATAGAGTTGGTTTGAGTAATGACGAGTTTGATGCTTTTAGTATCATGCTCTACCCTGCTGAATATATTGTAGACAATAGACCAGGTGATGTTTTATACACGAACGTTGCACCTATTGATGCAAACTCAAACTTAGACTTAACTTCTCCTAACAATGTTCTATACAAATATAATTCAGTAGAAGGTGGTATTATCGTTCCTAGAGGTTGTTCTTTAGTTGGAACTGACCTTCGTCGTACAAAAATTATTCCAAAATATGTTCCATATCCTACAACGTATGCTGCAAAAGGCATTAACACAGAAGATCAAGTTCCTCCAAGAACAGCAATCTTCAAAGTTACTGGTGGTACTTATTTCTGGCAATTCTCTTTCTTCGACGGTGCTGAAGAGGGTGTATACTTCAAACCTGATTCCACTGAAACATTAGCACCTAAGTTTTCACATCATAGACTGACTTGTTTTGAGTTTGCTGATGGTCTTAATCCATTATCAACTCTTATTTCACAAGGAACAGTTCCCTCTGCTGATTACTCTGCTGTATCTAATATCCTGCAGAGAACTGATTTAGAGATTTATTATCAGAAAGTGTCGAAAGCTTTCGCAACTATCCCTGATACATCTGGAGATCCTGCAACTGACCAGATTCAAGCAAGGGTAGAAGAAAACCGTATTGTAGGTCCTATCTCCGATGAATACCGAGTCCTTCAGATCACAAGAAATGGACAGACAGCTACGGCTGTCACTGTTGACGAGTTTGATAACCCCAGAGACCACGGATTTTCTGTTGGTGTTAACATCAACGTTAGTGGTGTTACAGGATCAACTGGATCGCAATCCGATCTTGATGCAGGAGTTTATAACGGGTCTTTCACCGTCACTTCGGCATCGGGTAACGTCTTCACTTACCAGATGCAATCAGTCCCCTCAGGAAACGCAGTCGGATCAAACATAACTGTTAAGACTGAGATTGATACTGTTGACTCAGCATCACCGTATGCATTTAACCTATCACTTAGATCAGTGTGGGGTATGAATGGTATGCACGCAAACGGTGCAAAAGCAACTGGTTTCAAATCAATGGTTGTGGCACAGTTTACTGGACTGTCACTACAGAAAGACGATAGAGCATTTGTAAGATATAACGCATCAACTGGTAACTATGATGTAGCAACAGCAGGTGATGGTGCACATTTAGATGGTTTCGCTGAATATAGAAAAGGATGGGGTCATGAACACATCAAGTGTAGTAACGACTCATTCATACAGGCAGTTTCCGTGTTCGCTGTGGGATACCAAGGTCACTTCACTGCACTAAGCGGTGGTGACATGTCAATCACCAACTCTAACTCTAACTTTGGTAACACTGCTCTCAGATCAGCAGGATTCAAAGCAAAAGCATTTTCAAAAGATAAAGCGGGTACGATTACACATATCATTCCCCCAAAAGCACTCAATACAATTTCAACAACTGCAACAGGAACTAATGGTTCTTTAAATATTACTCTTGCTAATGATGGATCAGTGAATGGTCTGATTCAAGGTATGACTGTATCTGGAACAAATATTGCTACTGGTGCAATCGTTAGTTCAATTAACACAAATACTAGAGTAATCACACTTTCTGCTGCAAATACGGGAACTGTTAACGGGAACGTAATCTTTGGTGAAGAGACATCTGTTAACTGGGTAAACATTGATATTCAAAGAACTAAAGTAATTAATACTGCACTTTCTGGACAAGGTGGAACACCAGGCACAAGACTATACTTATATGGTTATACTGTTGAAGCGTCTCCTCCAACCAGTAGAGTTCAAGGTTTTACAGTCGGTGCAAGACAAGACGGAACTGGTAATAGTGCTATAGCAGATAAAATTAACTGCTTGTTAGTTGCTCAAGGTGCATCTTCTGCAACTGTACAGTCAGCAAGCATATCACCTTATGGTCCTAGTGTATCTGGTCTTGCAGCTGGTGTAACTGGATCTCCATTACAATATGATAGTAATACATATACTATCAATGGTGTTGCAGGTTCAGTCGGTGGTTGGTATCTAAGTGTATCTTCTACTAATAACAGTATTTACGAAGCGTTAGCAAATAATACACAATACAATACAGTCAGTTTTACTCCTACTACATTCCTCAAGAGAATCCCTGATCCAAGAGACTTACAAGATAGAACATATCGTGTACGTTATGTAATTGATAAGGATAAGACTAATCCACTACCTAGAGATCCTATCTCTGGTTTCGTATTACAACCTCTTAACAGTGATACTACAACATATAACTTACAACGTGCATTTTATATTTACGATATCGAGACTGTTCAAAAGTTTGAAAGAGGTGTTAGTGATGGAATATATTATCTAACATTACTATGCGGTTCTATTGCACCTACTACATCTAACTTTGATGATAGGAAGTTCTCACAGAACGTTAACGAAGTTTATCCTACATTCGACAGAGATAATCCAGTTGCTGATCCTCCTGCTGCAGTCTCTGAAGCTTCCAATGTTACCATAGGTCTTGTTAATTCTACTGATGGTGCAACTCCAACTGCTGCACTTGACCCCCAGAGATCTATTACTAAAGAAGCAATTATATTCTTACTGACTGATACTGGTTGGCAGAATCCAGGTTCAACTCCTGCGTACGATTCAGTTAACGGACGTCTTGCAGGTATTGAACTGACTGCACGGGCAGGAGACGAAGAAACCCGTAAGATTAATATTAGACAAGATAACTCTGGAGTGGTTGCACCAATCAACGTAGAGTTTAGACGACACTCAATCATGCGTTCTGGTAACCATACCTTTGAATATCTTGGTTTTGGTCCAGGTAACTACTCAACTGCGTTCCCTCAAACTCAGGTAGAAACATTATCACCTGAGCAGATCAGATTCTCACAGTCTATTAAAGAAGAAGGAGGAGTTGCATTCTACTCTGGTTTAAACAGTAATGGTGATTTATTCATTGGTAACCAGGTGATTAACCCTGTTACGGGTCAGATCACTAACGAAGATATTGCACAGTTGAATGTTGTTGGTGAAGAGAACACAACCATTGAAACGTTCTCTGAATTAGTATTGACTGATAAACTGACTGTTATTGGTGGTGCATCTAACGCACTTGAATCAATCTTTGCAGGTCCTGTCACATTCCAAGGTCAATCTACATTTACAAACAACATAACCGCTAAGAAATTTACCTATAATAACCAAGATGGTACAGTTATTAAACAAACCTTACTAGCACCAGAAAATGCAAGTGGACTCCCCGATTTTAGTAATATCACAGGATACGATACGCCTGGTGATGGTGATATTGTTTACAACATCAATTGGTCACCTGGTAAGTCTCTTGGTTGGATTTATTACGGAGCTGCGTGGTATGAGTTTGGTATCACGGATACTGGTCAAATCAATGTTATTAATGACTCTGGTGTCACGAGGATTGGTCTTGGTGTTGCTCCTACGTCTCCTTACAGGGCAAACATCAACGGTTCAGTAAGGATTGATGGAGACTTAGTTGTTACTGGAACTGGTGGTGTAACAGCTGCCAAATATAAAAAGAAACAATACACAGGAGACGGTAACCAATTAACTTTCGCTGTTAGCACATACACTGGTGGCATTCAACACACTGAGAACTCTTTAATAGTATTCTTAAATGGTGTTGCACAAATTCCAGGCACTAACTACACTGTTGATTCAAATGGTGCAAACGTGGTGTTCAGTGGTGGAGACGCACCTCTTTCAACAGATATTGTGCATATTCTCGAATTACCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8e7941fc48377482cabbafd79bf98f94662d3842cf00e609b8609cffba3441b5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3786
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 9303-10a Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank