Protein

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Genbank accession
WMM35586.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,53
Protein sequence
MGLKSTFNKDKSKAEACAVGKYVNTAYDNMVIISKNIDALLEISETLVYLTTYLGPYESDPTERPNGSPLQDGDYYFNTLDNALKYYDMAEDNWFGVDPQEILDARDAAQAAQAGAETAEANALVSANNAATSETNASNSEVAALASEQAAATSEANALASENAAAQSETNAAASESAAATSAANALASENASVASETAAAQSESNAATSESNAATSASEAATSETNAGASEDAAANSAVIAAGYAADAEAAFDNFTDLYLGAKATDPITDNDGNSLQVGATYWNTTSNDLRYWSGATWDIPEQTAIQAANDAVAARDDAQVSETNAANSASAASTSESNAAQSASDALASENAASTSESNAATSESNAATSASSAAASENNAAQSAVDAQQSADDTAAIVPSLQSQIEDRVTYPDLTTAQGDVLGGKLIKGSNSETVENGDEIPAGTTHLRVLVGGKPTIVAMSPIASGIVNSLTDKGAVIGGDDVSFTRHLEVSTVFDLMNHPLISEGFTVETEGYYTPGDGGGNTYEIVAPGTGVEDGGSFINLTGSGFQAKGIFEGHDVDIRQFGVLRNGEKDTNAFKAALTFCFSNNKNLDVSVDIHVTDVTINSGVGSVTCSNGVIIAHPDSDQSDVYGSELLTFGAGVSGSEFYLKIDLNGLPKSGVALEGEGNKSDLIYVSNGVVTQPRTRNIWGARISNDRNIVGTVKTEGFSFYEDPMVGVYSVVVDNHCQDTEIQRIISNGSAAILNNGKRTNVGYVRSEKSEDNAVYEIEGAEELHIGTLVVSECSDEVLVLSKNKLARIDTIIATNCARGIGIAETDNSSVGTLIWNSELGSIQDSGSPLYFRPTQVGRTSSFTIDHMIINGKWDNGAPIYTLDNGEIGTLTIGKITANLVYSNVNATKYLGFWSANTDRIQIGDINVTVTDETGTLSSSDTFLLTLPGLLSLPSNIGGITLSNGGGSHNVRAINITEPNLVISNTPTVRADIGTPFIPQNDTQQTTRFYGSGAVPTNGTWKKGDTVWNQFPTAGGHLGWVCVTGGTPGAWKKFGDIEP
Physico‐chemical
properties
protein length:1052 AA
molecular weight: 109387,70850 Da
isoelectric point:4,23498
aromaticity:0,06464
hydropathy:-0,23536

Domains

Domains [InterPro]
DC_1735
STR
18–185
DC_1735 DC_2093 DC_2319
DC_1462
STR
492–1051
DC_1462
WMM35586.1
1 1052
Architecture
STR
STR
STR
STR 18-185 | STR 188-318 | STR 360-1051 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WMM35586.1
1 1052
Domain Start End Length (AA) Confidence
N-terminal 1 578 578 0,9974
Central domain 579 981 404 0,9763
C-terminal 982 1052 70 0,9389
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-578
Central
579-981
C-terminal
982-1052

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PJN101
[NCBI] 		3072195 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WMM35586.1 [NCBI]
Genbank nucleotide accession
OR204649.1 [NCBI]
CDS location
range 63538 -> 66696
strand -
CDS
ATGGGTTTAAAATCAACCTTTAATAAAGATAAGAGTAAGGCAGAAGCATGTGCAGTGGGCAAGTACGTCAACACTGCATACGACAATATGGTTATCATCTCAAAGAACATTGATGCTCTGTTAGAAATTTCAGAGACCCTTGTCTACCTTACTACCTATTTGGGCCCGTATGAATCGGACCCTACAGAGCGTCCTAACGGTTCTCCGTTACAGGATGGTGACTACTACTTTAACACTCTAGATAACGCACTGAAGTACTACGACATGGCAGAAGATAACTGGTTTGGTGTAGACCCTCAGGAAATTCTAGATGCACGTGATGCTGCACAAGCAGCACAGGCTGGTGCCGAGACAGCGGAAGCAAATGCTTTAGTGTCTGCAAACAACGCTGCTACATCTGAGACTAATGCTTCCAATAGTGAGGTAGCTGCACTTGCGTCTGAACAAGCTGCTGCTACTTCTGAAGCTAACGCTCTAGCTAGCGAGAACGCTGCTGCCCAATCAGAAACTAATGCTGCTGCGAGTGAATCTGCTGCTGCAACTAGCGCTGCTAATGCACTAGCCTCTGAGAACGCCTCTGTGGCTTCTGAGACGGCCGCTGCACAAAGTGAGTCCAATGCCGCCACTTCAGAGTCAAACGCTGCTACAAGCGCTTCTGAGGCCGCTACAAGCGAGACTAATGCAGGTGCCTCTGAGGATGCTGCAGCAAACTCTGCAGTAATTGCTGCGGGATATGCTGCGGATGCTGAGGCTGCGTTTGATAACTTTACTGATCTGTACTTGGGCGCTAAAGCGACTGACCCTATTACAGATAATGATGGTAACTCTTTGCAGGTAGGTGCTACATACTGGAACACTACTTCTAATGACTTACGTTACTGGTCAGGGGCTACATGGGATATCCCAGAACAGACAGCAATCCAAGCTGCTAATGATGCAGTAGCTGCTCGTGATGATGCTCAGGTATCTGAGACGAATGCTGCTAATAGTGCTTCTGCTGCTAGTACTTCAGAAAGTAACGCTGCTCAGTCGGCTTCTGACGCTTTGGCCAGTGAGAATGCTGCGTCAACCTCCGAGAGCAACGCTGCAACCTCTGAATCAAATGCAGCTACGTCGGCTTCTAGCGCTGCTGCCAGTGAAAATAACGCAGCTCAGAGTGCAGTAGATGCCCAACAGAGTGCTGACGATACAGCTGCTATTGTCCCTTCACTTCAATCTCAGATTGAGGATAGAGTAACTTACCCTGATTTAACTACAGCTCAGGGTGATGTATTAGGAGGAAAATTAATCAAAGGGTCGAATAGTGAGACTGTAGAGAATGGTGATGAAATTCCTGCGGGAACTACACACCTTCGAGTTTTGGTTGGGGGTAAACCTACTATTGTTGCAATGTCTCCTATTGCAAGTGGAATCGTAAACAGCCTTACTGATAAGGGAGCTGTAATTGGAGGAGATGATGTTTCTTTCACTAGACACTTAGAAGTTTCTACGGTCTTTGATTTAATGAATCACCCTTTAATTTCAGAAGGTTTTACCGTTGAAACGGAAGGCTACTACACGCCAGGCGATGGGGGTGGTAATACTTATGAGATTGTAGCACCCGGAACCGGGGTGGAGGATGGTGGATCTTTTATTAATTTAACTGGTAGCGGATTCCAAGCAAAGGGTATTTTCGAGGGTCATGATGTTGATATCCGTCAGTTTGGGGTTTTGAGAAACGGAGAGAAAGACACTAACGCATTCAAAGCGGCATTGACTTTTTGCTTCTCAAATAACAAAAATCTTGATGTTTCTGTAGATATTCATGTTACTGATGTGACCATAAATTCAGGCGTCGGGAGTGTCACTTGCTCCAATGGGGTAATTATCGCCCACCCTGACTCTGACCAGTCTGACGTTTACGGGTCGGAACTGCTTACCTTTGGTGCGGGTGTGTCAGGGAGTGAATTCTACTTAAAAATAGATCTGAACGGTCTTCCAAAATCAGGCGTAGCCCTTGAGGGGGAAGGTAACAAATCGGATTTAATCTACGTATCAAATGGAGTCGTCACACAACCGCGAACAAGAAATATATGGGGCGCAAGAATTAGCAATGACCGAAACATTGTTGGTACAGTAAAAACAGAAGGTTTTTCTTTTTATGAAGACCCTATGGTTGGCGTGTATTCTGTCGTTGTTGATAATCATTGCCAAGACACAGAAATACAAAGAATTATTTCAAACGGATCGGCTGCTATACTGAATAATGGTAAACGAACGAATGTGGGGTACGTGCGCAGCGAAAAAAGCGAAGACAACGCTGTGTATGAAATAGAGGGGGCAGAAGAACTCCATATAGGGACGCTTGTTGTGTCAGAGTGTAGCGATGAAGTCCTTGTTCTTAGTAAAAATAAGCTGGCTAGAATTGATACGATCATAGCTACGAATTGCGCTAGGGGTATAGGAATAGCTGAGACAGATAATTCAAGTGTTGGAACTTTGATATGGAATTCTGAATTAGGATCAATCCAAGATTCAGGATCTCCTCTTTATTTTCGACCAACGCAAGTAGGAAGAACAAGTTCATTTACTATAGATCACATGATCATAAATGGTAAATGGGACAATGGCGCTCCAATTTACACGCTGGACAATGGTGAAATTGGAACGCTAACAATCGGAAAGATAACGGCTAACCTAGTGTATAGCAATGTTAACGCAACTAAATATCTTGGTTTTTGGTCAGCCAATACAGATAGAATTCAAATAGGTGATATCAATGTAACTGTAACTGACGAGACTGGAACGCTTAGCTCAAGCGATACGTTCCTATTAACTTTGCCAGGGCTGCTTTCCCTTCCTTCTAATATAGGAGGTATAACTCTATCTAATGGAGGAGGTAGTCATAACGTCAGGGCAATAAATATAACGGAGCCAAATTTAGTTATTTCCAACACGCCAACTGTGCGTGCTGATATTGGAACTCCATTTATACCTCAAAATGACACCCAGCAAACAACAAGGTTTTACGGTTCCGGGGCTGTACCAACCAACGGCACTTGGAAGAAAGGTGATACGGTGTGGAACCAGTTTCCAACAGCAGGCGGTCATCTTGGATGGGTTTGCGTTACAGGCGGAACCCCAGGTGCATGGAAAAAATTCGGGGACATTGAGCCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
914377fc79f31fbf6cb28087e6990fec4e69c63909a554e3805f96c7e6a22d68
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6894
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Vibrio parahaemolyticus phage Chen,Y. and Liu,Y. 2022-07-23 — GenBank