Protein

View in Explore
Genbank accession
UXR08314.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MVIKYDIGSNEIVLHLREGKYITGFTTVGGYDKEIGQVKVNREILPAYFFDNFAYERYLYYSRPEEVIENKDYVPPQNNSFEVESQQNTVPKEQYDNLKEELELMKKQQEAMMKMLQQLLGQKGQ
Physico‐chemical
properties
protein length:125 AA
molecular weight: 14771,56580 Da
isoelectric point:4,96394
aromaticity:0,12000
hydropathy:-0,75680

Domains

Domains [InterPro]
DC_0295
STR
4–124
DC_0295
IPR021358
STR
18–77
IPR021358 Coil
UXR08314.1
1 125
Architecture
STR
STR 4-124 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_ScaM-V1SC04
[NCBI] 		2983349 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus capitis
[NCBI] 		29388 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UXR08314.1 [NCBI]
Genbank nucleotide accession
OP297178.1 [NCBI]
CDS location
range 110708 -> 111085
strand -
CDS
ATGGTTATTAAATACGATATAGGAAGTAATGAGATAGTATTGCATTTAAGAGAAGGTAAATATATCACAGGATTTACAACAGTAGGTGGATATGATAAGGAGATAGGACAAGTAAAAGTTAATAGAGAAATTTTACCTGCTTATTTCTTTGATAATTTTGCTTATGAAAGATACTTGTATTATAGTAGACCTGAAGAGGTCATAGAGAATAAAGATTATGTACCACCTCAGAACAATAGTTTTGAGGTAGAATCCCAACAAAATACTGTACCTAAAGAACAGTATGATAATTTAAAAGAAGAGCTAGAACTTATGAAAAAACAACAGGAAGCTATGATGAAAATGCTTCAACAACTCTTAGGTCAAAAGGGGCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fee17372ba9c218b3b9b85f0fd3c3307208e0478ef21ff10ecd9645cf7e8b7d5
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8623
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
An innovative bacteriophage-based decontamination to control environmental colonization of intensive care units with Staphylococcus capitis : an in vitro proof-of-concept Chavignon,M. and Kolenda,C. 2022-11-16 — GenBank