Protein

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Genbank accession
YP_195259.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MPVYSFSSDPLYVAEGQTIQFRYEAPPGFNAIEQVTIQIGELTTFWIIETRDEDFEPDGYELQDIDPAQTDTVFTYAETAAGPDEPPFGGGGGPPLRTGEEVITITGLSDTTQAPISISSNVVNSADYAFRIRRWNGTSYDPWPAFTTGDNVPAGTIFVSNQDQIQVRLKSSSAPADVKRVNVTVGTGSATWNITTGPLPVNIPNPAPEFGPLNGLDLDVQIYSNVVQINGLTTTADIAIDNSGEVAVSNSSTTSTNDDGYAVLTGVTWFSSTTVSNGQYVQLRGRSSVTPNTDKIFSVDIGSAPGIAAWNTRTGNGIDDTPDIILFTDLSNIIPGTNNIGSNVVTISGLTDGLFVPVVIREVETTDQTISNPRIRINGSSSGTFSNVTVENDDEIQLIVDSDPNVSNPLIPGQGSVSLAINVGDRLVPAWNVTNWTGPDTTPAFTQPTNLTNQVPGGVSVVGPIGLTDFNLDITVSVTTPQAYDETGSAVADPLGEVLISVNGDTAVAGPRIVSPDNTGNPVSITFFVNQPGNANIDPVEGLSWYSEFDITIGDAPTFTFRSFNYAVKPVPPSYKGIWYSNKNEFFDEVAYEAAGSPAANSGDYYRAPKFDGYSLGTVLPVTKENINGYGDLEARFPGFMECDGRSLNAADYPFLFDAIGSQYGGNGEYNPTTKEYTGTFNLPDYRNRRLVGTGIVDGNRGSSAFLEATNSGGSFEITGSSGGFWYVSDVGVAGPDPIEQVTVTSLGQNTGTTSDFFELGTPRTFGTELLETEVDFNVVGSVNAVIGPVGEIAVRVPQHEHFVITGVPADFSGDPVIPWNARAYYGTAEAGDGTTAEVSDEPSSDTVYNLWTTIGGINSGVFSSELGDMDGSTLRDYLPLGPEDGNTNATFGNYWGTTTGPLTSLSPSTSYFRQSGTMNDAAVLDTTEDSTRVDAYISIYGELSHSHLLGEDKVDDPNTDYTYGNSDAAGAKRGLANFSNVHTLTFNQADVAIELNTAAFSWNNATKPIPTVALDPQRKVPILAPFHKIKYIIKVY
Physico‐chemical
properties
protein length:1037 AA
molecular weight: 110426,62900 Da
isoelectric point:4,08720
aromaticity:0,09740
hydropathy:-0,22623

Domains

Domains [InterPro]
DC_0346
STR
1–1021
DC_0346
IPR037053
ATT
612–687
IPR037053
IPR011083
ATT
638–689
IPR011083
SSF88874
STR
639–758
SSF88874
YP_195259.1
1 1037
Architecture
STR
ATT
STR
STR 1-611 | ATT 612-689 | STR 690-1021 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_195259.1
1 1037
Domain Start End Length (AA) Confidence
N-terminal 1 748 748 0,8024
Central domain 749 947 200 0,2602
C-terminal 948 1037 89 0,6599
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-748
Central
749-947
C-terminal
948-1037

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-PM2
[NCBI] 		238854 Uroviricota > Caudoviricetes > Pantevenvirales > Nodensvirus > Nodensvirus spm2
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_195259.1 [NCBI]
Genbank nucleotide accession
NC_006820.1 [NCBI]
CDS location
range 184683 -> 187796
strand +
CDS
ATGCCAGTTTATAGTTTTAGTAGCGATCCATTATACGTAGCAGAAGGGCAAACTATTCAGTTTCGCTATGAAGCTCCTCCTGGTTTCAATGCCATTGAACAGGTTACGATCCAGATTGGTGAACTAACAACTTTCTGGATTATTGAAACCCGTGATGAAGATTTTGAACCTGATGGATACGAATTGCAGGATATTGATCCTGCACAAACTGATACTGTTTTTACTTATGCTGAAACTGCAGCAGGTCCAGATGAACCACCTTTCGGAGGTGGAGGTGGTCCTCCTCTAAGAACTGGCGAAGAAGTTATTACAATTACTGGATTATCTGATACTACTCAAGCTCCAATATCTATTTCTTCTAATGTAGTTAATTCTGCAGATTATGCATTCAGAATTAGAAGATGGAATGGCACTTCATATGATCCATGGCCAGCATTTACTACGGGCGATAATGTTCCTGCAGGTACAATTTTTGTATCTAATCAAGATCAAATTCAGGTAAGACTTAAATCTTCTTCTGCACCAGCTGATGTTAAGCGAGTTAATGTTACAGTTGGAACTGGTAGCGCAACATGGAATATTACAACTGGACCACTTCCAGTAAATATACCAAATCCAGCACCAGAATTTGGTCCTTTGAATGGTCTAGATTTAGATGTTCAAATTTATAGTAATGTTGTACAGATAAATGGACTGACAACAACTGCAGATATTGCTATTGATAATTCTGGTGAAGTTGCAGTATCAAATTCTTCAACGACATCCACTAATGATGATGGATATGCAGTATTGACTGGAGTAACATGGTTTTCATCTACAACAGTTAGCAATGGTCAGTATGTTCAATTAAGAGGAAGATCTTCAGTTACTCCAAATACAGATAAGATTTTCTCCGTTGATATTGGATCTGCTCCTGGCATTGCTGCGTGGAATACTAGAACAGGAAATGGTATTGATGATACGCCAGATATAATATTATTTACAGATCTGAGTAATATTATTCCAGGAACCAATAATATTGGATCAAATGTTGTTACAATTAGTGGTTTAACTGATGGATTATTTGTTCCTGTCGTTATACGAGAGGTAGAAACTACAGATCAAACAATATCAAATCCAAGAATTAGAATTAATGGAAGTTCGTCAGGAACATTTTCAAACGTTACTGTAGAAAACGACGACGAAATTCAATTGATTGTTGATTCTGATCCTAATGTATCAAATCCACTTATACCTGGACAAGGTTCAGTTTCTCTTGCGATTAATGTTGGAGATAGATTAGTTCCAGCATGGAATGTAACAAACTGGACTGGACCAGATACAACTCCCGCATTTACTCAACCTACTAATCTAACAAATCAAGTTCCAGGTGGTGTAAGTGTAGTTGGACCTATTGGATTAACTGATTTTAATCTTGATATTACAGTTTCTGTGACAACTCCTCAAGCATATGATGAAACTGGCAGTGCAGTTGCGGATCCTTTGGGTGAGGTATTAATTTCCGTAAATGGTGATACTGCTGTTGCTGGACCTAGAATAGTTTCACCTGATAATACAGGAAATCCAGTCAGTATTACTTTCTTTGTAAATCAACCAGGAAATGCAAATATTGATCCAGTTGAAGGATTATCATGGTATTCTGAATTTGATATTACAATAGGAGATGCACCAACTTTTACATTTAGATCTTTTAACTATGCAGTAAAACCAGTTCCTCCATCATATAAAGGAATATGGTATTCAAATAAGAATGAATTCTTTGATGAAGTAGCATATGAAGCAGCTGGATCACCTGCTGCAAATTCTGGAGATTATTATAGAGCACCTAAATTTGACGGATATTCTCTTGGAACTGTCTTACCAGTTACAAAGGAAAATATTAACGGATATGGTGATTTGGAAGCAAGATTCCCTGGATTTATGGAATGCGATGGAAGATCATTAAATGCTGCAGATTATCCATTCTTATTTGATGCAATTGGATCTCAATATGGCGGAAATGGTGAATATAATCCAACTACAAAAGAATATACGGGTACATTTAATCTACCAGATTATAGAAATAGAAGATTAGTTGGTACTGGTATTGTTGATGGAAATAGAGGATCTTCTGCTTTCCTTGAAGCAACAAATTCTGGAGGATCTTTTGAAATTACAGGTTCATCTGGAGGATTCTGGTATGTTTCTGATGTTGGTGTTGCTGGCCCAGATCCTATTGAACAAGTTACAGTTACATCACTAGGACAAAATACTGGAACAACATCAGACTTTTTTGAATTGGGAACTCCAAGAACATTTGGAACCGAACTACTTGAAACTGAAGTTGATTTCAATGTTGTTGGTAGTGTGAATGCAGTAATTGGACCTGTTGGAGAAATTGCAGTTAGAGTTCCTCAGCATGAACACTTTGTGATTACTGGAGTTCCTGCTGATTTTAGCGGCGATCCAGTAATTCCATGGAATGCAAGAGCATATTATGGAACAGCAGAAGCTGGAGATGGAACAACTGCTGAAGTTAGTGATGAGCCATCCTCAGATACTGTTTATAATCTATGGACTACTATTGGTGGTATTAACTCTGGTGTATTCAGTTCAGAACTTGGTGATATGGATGGATCTACATTGAGAGATTATCTCCCACTCGGACCAGAAGATGGTAATACAAATGCCACATTTGGAAACTATTGGGGAACAACAACTGGACCATTAACTTCTCTATCTCCATCTACATCATATTTCAGACAAAGTGGAACTATGAATGATGCTGCAGTTCTTGACACAACTGAAGATAGCACGAGAGTAGATGCATATATTTCGATTTATGGAGAACTTTCTCATAGTCACTTATTGGGCGAGGATAAAGTGGATGATCCAAATACAGACTACACGTATGGCAATTCAGACGCTGCTGGAGCTAAGAGAGGATTGGCGAATTTCTCTAATGTCCATACCTTGACATTCAACCAAGCCGATGTAGCAATTGAATTAAATACTGCTGCATTTAGTTGGAACAATGCTACAAAACCAATTCCAACGGTTGCATTAGATCCACAAAGAAAAGTGCCTATTTTAGCACCATTCCACAAGATCAAATATATAATAAAGGTGTATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
785ae4375a83bcec04a7ca0786836dc9f4a26d526f003237850a862a7ca0f0b8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5564
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50