Protein

View in Explore
Genbank accession
WPF64884.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MQTGIDSGGGYTATNSLVALSGGQKVYCSFYFRTFNGEVNPNYIYAMGGGGNFKLDQVTYTPTGYNGWVRCDAVGTCPAGRPSQTYGLLIACDSAVNNGICNYDNIYYGTNRPIYSGMATSPIIDVSNKTTLGKDIARVKSSVLIFGDKGGTPTNQGSWMPPRGMKARYSTDGGTTWSAWNNVSYAGSIVPAGTDATNLRVQLQYSMSRWNSYDDVRLGNVQVSMIYEEDKYIPDTDIINYASDRIKPYMEVEMQDGNWIEFPLGVFLLNSPTRIDDTNKVHREIEAYDQLVILRDIKAYWNHTYTGNVVQNIRLIMTNYDVLINPNLISIPPIQISQNFTFPIGTPYLEIINTMLEAIGYYPLWVDANGVFRSSPYISPANRPADYKYFDDELSVTYNGMESELDLFETANAWVAVSNDLDGNQTFSRIRQNNDQGITSIKSVGRIIVDYREVESIKTQAALDAYVDRLIQESTATYGKIRFKTALMPMHEYQDILHIRYGPLGIDDTFGETAWKMQLKAGGEMEHEARRVVYLR
Physico‐chemical
properties
protein length:536 AA
molecular weight: 60119,85100 Da
isoelectric point:5,00106
aromaticity:0,11567
hydropathy:-0,33507

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPF64884.1
1 536
Domain Start End Length (AA) Confidence
N-terminal 1 72 72 0,0019
Central domain 73 304 233 0,4524
C-terminal 305 536 231 0,4597
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-72
Central
73-304
C-terminal
305-536

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage MVC_VPHSA1
[NCBI] 		3088876 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPF64884.1 [NCBI]
Genbank nucleotide accession
OR670591 [NCBI]
CDS location
range 18980 -> 20590
strand +
CDS
ATGCAAACTGGCATTGACTCTGGAGGCGGCTACACAGCAACAAATAGTTTAGTTGCACTGTCTGGTGGTCAGAAGGTTTACTGTTCGTTTTACTTTAGAACATTTAACGGAGAGGTTAATCCAAACTACATCTATGCAATGGGTGGAGGCGGAAACTTTAAATTAGACCAAGTGACTTATACACCTACAGGTTACAATGGTTGGGTGAGGTGCGACGCTGTTGGGACGTGTCCAGCAGGTAGACCGTCTCAAACTTATGGTTTACTTATAGCTTGTGACTCAGCAGTTAACAATGGAATTTGTAACTACGACAATATCTATTATGGAACTAACAGACCTATCTACAGCGGTATGGCTACTAGTCCAATTATTGATGTAAGCAACAAAACTACTCTAGGAAAAGATATTGCACGAGTAAAAAGCAGCGTTTTAATCTTTGGAGACAAAGGAGGAACACCAACAAATCAAGGCTCTTGGATGCCACCAAGAGGAATGAAGGCTCGCTACTCTACTGATGGCGGCACTACTTGGAGCGCTTGGAACAACGTAAGTTACGCTGGCTCAATAGTTCCAGCTGGTACTGACGCAACCAACCTGAGAGTGCAACTTCAATACAGTATGTCTCGTTGGAATAGCTATGACGACGTAAGACTCGGAAACGTTCAAGTGTCAATGATTTACGAGGAAGATAAATATATACCTGACACGGATATTATTAACTATGCAAGTGACCGTATTAAGCCATACATGGAAGTTGAAATGCAAGACGGTAACTGGATAGAGTTTCCTCTGGGAGTATTCTTACTCAACAGTCCAACTCGAATAGATGATACTAACAAGGTACACCGAGAGATTGAAGCTTATGACCAGCTCGTTATACTGAGAGACATTAAGGCTTATTGGAATCACACCTATACAGGAAACGTTGTGCAAAATATCCGTCTCATAATGACAAACTACGATGTACTCATTAACCCTAATCTCATTAGCATACCACCAATACAGATAAGTCAAAACTTTACGTTTCCAATTGGAACACCTTACCTAGAGATAATTAACACAATGCTTGAGGCTATTGGTTACTATCCTCTGTGGGTTGACGCAAATGGTGTATTTAGAAGCTCGCCTTATATCTCGCCAGCTAACCGTCCAGCAGACTACAAATACTTTGATGATGAACTCTCAGTAACCTACAACGGTATGGAAAGCGAACTTGATTTATTTGAGACAGCTAACGCTTGGGTTGCTGTTTCGAATGACCTAGACGGTAATCAAACTTTTTCTAGAATCAGACAGAACAACGACCAAGGCATTACGTCTATTAAGTCAGTAGGACGAATTATAGTAGACTATCGAGAAGTTGAGAGCATTAAGACTCAAGCAGCTCTTGACGCTTACGTTGACCGTTTGATACAAGAAAGTACAGCAACCTATGGAAAGATACGTTTCAAAACAGCTCTAATGCCAATGCATGAGTACCAAGACATTTTACACATTCGTTATGGTCCTCTGGGTATTGATGATACGTTTGGAGAGACAGCTTGGAAGATGCAACTCAAAGCAGGTGGAGAAATGGAGCACGAGGCTAGAAGGGTGGTGTATTTACGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
26343bb9d4c8172920e8cf073c1c5ab0fe002a7d98eb22528790d7badfcc9332
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7417
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Sequence of the Siphoviridae Staphylococcus aureus Phage MVC_VPHSA1 Deepak,S.J., Porteen,K., Wilfred,R., Anbazhagan,S., Elango,A., Senthil Kumar,T., Narendra,B., Sureshkannan,S., Nithya Quintoil,M., Charley,C.A., Teresa,S. and Raghavendra,A.G. 2015-02-26 — GenBank