Protein

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Genbank accession
AJD83085.1 [GenBank]
Protein name
neck passage structure protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MTFLTNTLNLRQEVGGTKVKQGDFGSTFTFTLTDEQGNYYHELNSKTATITLCDDNNIVYQSTTLVSDSSVTFNIEKAVQTGVFYLEIKIDNYIFPSDRSCLISIEAGAVAYDLKDLIPNYDVNMTIDGILSDLNRQGGSVVDLLNKMASIYSNALTDHAEIIQARGGRSSLDVRLDGLDAKDSSLQAQITSNDADIDSTNARISSIVASAGDGTIPSELVDSRTDFDGKVYSLAGDHIRSIGKTLSEEIEASFVLTNKGYIEYSDGKETAYNNTAFNYSNKILVVSAKKILLTSQFAPGGTNGYAFYDNAGNYISGSNVYSEEIMVPNGAYYFAFTAYNLDISKIKVKIVLPTDIINNRLYYLENKNPIKKIAFTLTNDGYIDYKNGNFTVWATGAFYRSNKIDVSFAKELLLTSRFNGDAGCAFYDENGSFISGLNSIPSTITIPVNAKYFAFSMYRMTPSDVLLVGGYTFQNVINALNQKDSPTANFNYSYAIGKTLMIGDSLTSGYYSIAPYSGNSINQNVPYYVGKMTNNEVKNAGVSGIYPSKWFADELPKYNFADYDTVFIWLGTNNGLTDTMAADVNAFTDYNQYATTETGYYCRLIETIKNANPDVAIHISTCFHVFGGDIPATNKVINEIATKYDLNVINLSDLTVTEHPELHLNNGNQHFGKAGNIFIANRIINDVNSYYDANQLKLEFGLTPRTN
Physico‐chemical
properties
protein length:707 AA
molecular weight: 77944,94830 Da
isoelectric point:4,77012
aromaticity:0,11740
hydropathy:-0,20891

Domains

Domains [InterPro]
DC_1253
STR
56–360
DC_1253 IPR036514
DC_1253
STR
353–703
DC_1253
cd00229
ENZ
500–685
cd00229
SSF52266
STR
500–689
SSF52266
IPR013830
ENZ
502–675
IPR013830
AJD83085.1
1 707
Architecture
STR
STR 56-703 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AJD83085.1
1 707
Domain Start End Length (AA) Confidence
N-terminal 1 255 255 0,9967
Central domain 256 540 286 0,7449
C-terminal 541 707 166 0,1395
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-255
Central
256-540
C-terminal
541-707

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Str-PAP-1
[NCBI] 		1589270 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus parauberis
[NCBI] 		1348 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AJD83085.1 [NCBI]
Genbank nucleotide accession
KP208803 [NCBI]
CDS location
range 9778 -> 11901
strand -
CDS
ATGACATTTTTAACTAACACATTAAATTTAAGACAAGAAGTAGGTGGAACAAAGGTCAAACAAGGTGACTTTGGTTCTACCTTTACTTTTACGCTTACTGATGAACAAGGTAATTATTACCATGAATTAAACAGCAAGACAGCAACAATTACACTTTGCGATGATAACAATATCGTTTATCAATCAACAACTTTAGTATCAGATTCATCGGTAACATTTAATATTGAAAAAGCAGTACAAACTGGAGTTTTCTATCTAGAAATTAAAATTGACAACTACATTTTCCCATCTGACAGAAGTTGTTTAATTTCTATTGAGGCTGGGGCAGTTGCTTACGATCTTAAAGACTTAATACCAAATTATGACGTCAACATGACAATAGACGGCATTCTAAGTGATTTAAATAGACAAGGCGGAAGTGTTGTTGATTTGCTAAATAAAATGGCTTCTATCTACTCAAACGCTTTAACTGACCATGCAGAAATCATCCAAGCAAGAGGCGGTCGATCCAGTTTAGATGTACGATTGGACGGACTAGATGCCAAAGATTCAAGTCTACAAGCACAAATTACATCTAATGATGCAGATATTGATTCTACAAATGCACGAATCAGTTCAATTGTCGCAAGTGCCGGCGATGGAACAATACCGTCTGAACTTGTTGATTCTAGAACTGACTTCGACGGTAAGGTTTATTCGTTAGCTGGCGATCATATTAGGAGTATTGGGAAAACTCTTTCAGAAGAGATAGAAGCATCTTTTGTTTTGACAAATAAAGGGTATATCGAATATAGCGACGGAAAAGAAACTGCATATAACAATACTGCTTTCAATTATTCGAACAAAATTCTAGTAGTTAGTGCTAAAAAGATTCTTCTGACAAGTCAGTTTGCCCCGGGCGGTACAAATGGTTATGCATTTTACGATAATGCCGGGAATTATATTTCAGGGTCAAATGTTTATTCAGAAGAAATAATGGTTCCTAATGGCGCATATTATTTTGCATTCACAGCTTATAACTTAGATATTTCAAAGATAAAAGTAAAAATCGTGCTTCCTACAGATATTATCAATAATCGTTTATATTATCTTGAAAATAAAAACCCAATCAAAAAGATTGCTTTTACTTTGACAAACGACGGATATATTGATTATAAAAACGGAAACTTCACTGTTTGGGCAACGGGGGCATTTTATCGTTCAAATAAAATTGATGTCTCGTTTGCAAAGGAATTGCTATTGACAAGTAGATTTAATGGAGATGCAGGGTGTGCTTTCTATGATGAAAATGGGTCTTTTATTTCTGGTTTGAATTCAATACCATCAACAATAACTATTCCCGTAAATGCCAAGTACTTTGCGTTTTCAATGTACAGAATGACACCATCCGATGTTTTGCTTGTAGGTGGGTATACTTTTCAAAATGTAATCAATGCACTAAACCAAAAAGATTCTCCCACTGCTAATTTTAATTACTCATACGCTATTGGGAAAACACTAATGATTGGTGACAGTCTGACAAGCGGCTATTATTCAATTGCACCTTATAGTGGTAATTCTATAAATCAAAACGTTCCGTACTACGTCGGCAAGATGACGAACAATGAAGTAAAAAATGCTGGTGTATCTGGCATTTACCCATCTAAGTGGTTCGCTGATGAATTACCGAAATATAATTTTGCCGACTATGATACGGTGTTTATTTGGTTAGGAACTAACAACGGTTTAACCGATACAATGGCGGCTGACGTTAATGCATTTACTGATTATAACCAGTATGCAACAACCGAAACTGGTTACTATTGCAGATTGATTGAAACAATAAAAAATGCTAATCCAGATGTTGCCATTCACATTTCTACTTGTTTCCATGTTTTTGGTGGAGATATTCCTGCTACAAACAAGGTAATTAATGAAATTGCTACAAAGTATGATTTAAACGTTATTAATCTTTCTGATTTAACAGTTACGGAGCATCCCGAATTACATTTAAATAATGGTAATCAGCACTTCGGTAAGGCTGGGAATATCTTTATTGCAAATCGTATTATCAATGATGTTAATTCCTATTACGACGCAAATCAACTCAAACTCGAATTTGGCTTGACGCCTAGAACAAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
965a0164d42cab6feacfca8f23af2f06687dad0b3bd05d66f1f59acd77e59373
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7356
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50