Protein

View in Explore
Genbank accession
XOT37908.1 [GenBank]
Protein name
tail fiber
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MSRELMPKSGIMMPHVVVTRDAAVVGVSTVDGQAGAIDLTGKYLQKTDAAATYQTKVEGASKDFVLDSIQPIMSGALFREDPWVVNDTPFRSTGANGVESVDMMKVTTDNSIKIGSYASSVRGVEIHSAGRLQVVDQNDSGVETKYPVYSKRYRPEIDDLPFAAIGSYVKDSKGRTIGVTRTGINSDIKQLTQKVTFTQPVTVPDAVGDYDAVTLRQLRNSGGGSGGPTMSGISNFGIGDFHLRDSRAFIPAFEVTSDGQLLNRSEYPDLWAYAQLLSPISDSEWLSDAQKRGQYSTGDGSTTFRVPDRNGVQVGSIKELFGRGDGGISSNNGVIYDSAAPNIRGKVAGVSAGTYAGIFGTSVQDSFYTDNSLYPAGGGDTIPPGSGAVGGRNNTLVFDASQSNPVYGRYSISDNIIPRNFVGVWTIRATGGFVAANTSWSVINSDTTRPSNGTKVSSGSVVSEYKIGSEVEASTTLKTDAYINGAYYGIIDVYNKTKGVTKQLAFDDSGTLNSDRYVSRFGTLMSWSETGARKGTFSMDNQGIGSNYSFNSILSASQASNGGYKTTTHVGMIHNDAGTFADSCWHVAGDEDNKYGCRLTLRPNRNEIFYYTWQPSSTGTYTLALNPVSDERLKHNIQDISPEKAIKAIKGLDFKSFVYNSDEQGRTRRGVIAQQAEKVEPLYVKTRRFHDNDGVEQEQKELDSAPMLLDTMQVVQDLLKRIEVLEAKLAER
Physico‐chemical
properties
protein length:732 AA
molecular weight: 79200,00770 Da
isoelectric point:5,68779
aromaticity:0,08743
hydropathy:-0,40820

Domains

Domains [InterPro]
DC_1514
STR
20–315
DC_1514 DC_1985
SSF88874
STR
255–431
SSF88874 IPR030392
IPR030392
CHP
629–681
IPR030392
XOT37908.1
1 732
Architecture
STR
RBD
STR 20-431 | RBD 450-731 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOT37908.1
1 732
Domain Start End Length (AA) Confidence
N-terminal 1 74 74 0,9736
Central domain 75 273 200 0,4090
C-terminal 274 732 458 0,9003
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-74
Central
75-273
C-terminal
274-732

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage EK5
[NCBI] 		3389963 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOT37908.1 [NCBI]
Genbank nucleotide accession
PQ805429.1 [NCBI]
CDS location
range 34474 -> 36672
strand -
CDS
ATGTCTAGAGAATTAATGCCCAAATCTGGCATAATGATGCCTCATGTAGTTGTAACCAGAGATGCGGCTGTTGTTGGCGTTTCTACTGTAGATGGACAAGCAGGTGCTATTGACCTTACTGGAAAATATTTACAGAAAACCGATGCGGCTGCTACATACCAGACTAAAGTAGAAGGTGCATCTAAAGATTTTGTGCTGGATTCAATTCAACCTATTATGTCTGGTGCTTTGTTCCGAGAAGACCCTTGGGTTGTTAATGATACCCCATTCCGTTCTACTGGAGCTAATGGTGTAGAATCAGTTGATATGATGAAAGTTACTACTGATAACTCAATCAAGATTGGTAGTTATGCCTCTTCAGTTCGAGGTGTAGAGATTCATTCTGCTGGTCGTCTTCAGGTTGTTGACCAGAATGACTCTGGGGTAGAAACTAAGTATCCAGTTTATTCTAAACGTTACCGTCCTGAGATTGATGATTTGCCTTTTGCTGCAATTGGTTCTTATGTTAAAGACTCCAAGGGTCGTACTATTGGGGTTACTCGTACAGGGATTAACTCTGATATCAAACAACTTACCCAGAAGGTAACTTTCACTCAACCAGTTACTGTTCCTGATGCAGTTGGTGATTATGATGCAGTCACTTTGAGACAGCTTCGAAACAGTGGTGGTGGCTCTGGTGGTCCTACGATGAGCGGTATCTCTAACTTCGGTATTGGTGATTTCCATTTACGTGATAGTCGAGCTTTTATTCCAGCTTTTGAGGTAACATCAGACGGTCAGCTTCTTAACCGTTCAGAGTACCCAGATCTCTGGGCTTATGCACAGTTGTTATCCCCTATCTCAGATTCTGAATGGCTTAGTGATGCCCAAAAACGTGGACAGTACTCTACTGGTGACGGTTCTACTACTTTCCGCGTTCCAGACCGCAACGGGGTTCAGGTCGGTTCTATTAAGGAGCTATTTGGTCGCGGTGATGGTGGTATATCGTCCAACAATGGTGTTATCTACGATTCTGCTGCACCTAATATCAGGGGTAAGGTCGCTGGTGTATCAGCCGGGACTTATGCAGGGATATTCGGGACGTCTGTGCAGGATTCATTCTATACGGACAACAGTTTGTATCCGGCTGGTGGGGGGGACACTATACCTCCGGGGTCCGGTGCAGTTGGTGGACGTAATAATACTCTAGTCTTCGACGCAAGTCAGTCCAACCCAGTTTATGGTCGTTATAGTATCTCTGATAACATTATACCGAGAAACTTTGTTGGTGTGTGGACTATTCGTGCTACCGGTGGATTTGTTGCTGCTAATACTTCTTGGTCTGTTATTAATAGTGACACCACACGACCTTCCAACGGAACGAAAGTTTCTAGTGGGTCAGTTGTCTCTGAGTATAAAATCGGTTCAGAAGTAGAAGCTTCTACTACTCTCAAAACTGATGCCTACATCAACGGAGCTTACTATGGAATCATTGACGTCTACAATAAAACTAAAGGAGTTACCAAGCAGTTAGCTTTCGACGATTCTGGTACACTGAATTCTGATAGGTATGTTTCTAGATTTGGCACTTTGATGTCTTGGAGTGAAACAGGAGCTAGGAAAGGAACATTCTCTATGGATAACCAAGGGATAGGGTCTAACTACTCATTCAACTCTATACTAAGTGCATCACAAGCATCCAATGGAGGGTACAAGACTACAACTCACGTTGGTATGATTCACAATGACGCCGGAACTTTTGCCGATTCTTGCTGGCACGTTGCAGGTGATGAAGACAACAAATACGGTTGTCGCCTAACCCTTCGACCAAACAGGAATGAGATTTTCTATTATACTTGGCAACCCAGCTCTACTGGAACATATACCCTTGCCTTGAATCCTGTGTCAGATGAAAGGTTAAAACATAATATCCAAGATATTTCCCCTGAGAAAGCTATCAAGGCTATCAAAGGTTTGGATTTCAAATCGTTTGTGTACAACAGTGATGAACAAGGAAGAACTCGTCGCGGTGTTATTGCACAGCAAGCAGAAAAGGTAGAACCTCTTTATGTTAAGACTCGTAGGTTCCACGACAATGATGGTGTAGAGCAAGAACAGAAAGAGCTAGACTCAGCTCCTATGCTCCTTGATACTATGCAGGTTGTTCAAGACCTTCTGAAGCGTATTGAAGTTCTAGAAGCAAAACTAGCAGAGAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
28ee7380bfac705ce023474d4833a9483f6ddd798431d0361a194592aedf3e02
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6170
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Investigation of the effectiveness of bacteriophages isolated from environmental samples against clinical strains of Extraintestinal pathogenic Escherichia coli (ExPEC) producing extended-spectrum beta-lactamase (ESBL) Kulubecioglu,E., Karaynir,A., Bozok,T., Salih Dogan,H., Coral,G., Bozdogan,B. and Ocal,M.M. — — GenBank