Protein

View in Explore
Genbank accession
QIG68498.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,65
Protein sequence
MKADGSLKSLLQGISQQPVRDRLPGQGTAQINMSADPVKGLSRRPGEDLVNQLGPAGAAKGWGTFQTQDGKQWIVKITASGPQVFDFNGNQATVTVPGGDTYWSTNGQWSIATMKGKTYLANSGVIVEQDTVTSSYPNYTSYTMAVFQILGGNYGKTYTIRINNSVAASFTTPDGSVSSHALQIDTVYIATQLVASLVANGYNSGTWHTSRVEDVITVHNNVGVITSALISDGAGNINAKAMLDSVGDVADLPRFCWHNFAVRVAQEVDPEEDLWLKFVMDNPAGSLGTSGAWYECLAPGLSVGLKNTSMPRCLTYNATTGAFTAAVVDWADRNVGTNTTNPMPSFVGYPITDISMFQSRLIVLAGPNLIASRSKRYEDFFVGSASTLVDSDPLDLTSQAAFASTLKYAIPHNKDLVIFSTKGQFILFGRSAITPSNAALVLTTSFEADLMARPQACGRNVFFATKYGRFAGVREFYTEGGTDINDTRSITQHVNKYMVGSTVHMSATSNYDHLLVHTDNDRKNVYVYQFIWNDQEKIQSAWSKWQFSHEIVYSFFDDELIYLIMQIGTTYYLLRLSLDTVPEGALDYHVHLDARFDVTGVNTAFVLPFDWLADVPLTIVQGDDCPHPGLPVRISSIVYDPGEAGYVVTMREDMMGGDIIVGVNMLSEYQPTMPRAKDSDGVVISNARLVINQFLVSLAGTGEINGQKMTAWGDGPEVSFQGYITNSPGSMTGSPALDDHIFKMPFKAKADEAEVRFYTDSHWPMTILDIEWEGTINKRGKRIPVGN
Physico‐chemical
properties
protein length:787 AA
molecular weight: 85972,79510 Da
isoelectric point:5,15208
aromaticity:0,10165
hydropathy:-0,13164

Domains

Domains [InterPro]
IPR058003
TTP
5–783
IPR058003
QIG68498.1
1 787
Architecture
TTP
TTP 5-783 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG68498.1
1 787
Domain Start End Length (AA) Confidence
N-terminal 1 130 130 0,9746
Central domain 131 329 200 0,2177
C-terminal 330 787 457 0,2846
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-130
Central
131-329
C-terminal
330-787

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_TM38
[NCBI] 		2509767 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG68498.1 [NCBI]
Genbank nucleotide accession
MN988493 [NCBI]
CDS location
range 26139 -> 28502
strand +
CDS
ATGAAGGCAGACGGTAGCCTTAAATCACTACTGCAGGGCATTAGCCAGCAGCCTGTTAGAGATAGGTTGCCGGGCCAAGGTACTGCTCAGATTAACATGAGTGCAGACCCTGTTAAGGGCCTGTCTCGTCGCCCCGGTGAGGACCTTGTAAATCAACTTGGTCCAGCCGGTGCAGCTAAGGGCTGGGGAACCTTCCAGACACAAGACGGTAAGCAGTGGATTGTTAAGATCACTGCATCCGGCCCGCAAGTATTCGACTTCAATGGAAACCAAGCAACAGTTACTGTACCCGGTGGAGATACGTATTGGTCTACGAATGGGCAGTGGTCGATCGCTACTATGAAGGGCAAGACCTATCTGGCTAACTCTGGTGTGATCGTAGAGCAGGATACAGTGACGAGTTCGTACCCAAACTACACTAGCTATACCATGGCAGTATTCCAGATACTTGGTGGTAACTATGGTAAGACGTATACAATTCGTATTAATAACTCTGTAGCAGCGTCCTTTACCACGCCTGATGGTTCGGTGAGTTCACATGCCCTGCAGATCGATACTGTATATATTGCAACACAGCTAGTAGCAAGTCTGGTAGCTAATGGTTACAATTCCGGTACATGGCATACGAGTAGAGTAGAAGACGTCATCACTGTACACAATAATGTCGGTGTTATCACGTCTGCTCTCATATCTGACGGTGCTGGTAATATTAATGCTAAGGCTATGCTCGATAGTGTAGGTGACGTAGCAGACTTGCCTCGTTTCTGCTGGCATAACTTTGCTGTACGCGTTGCACAGGAAGTAGACCCGGAAGAGGACCTGTGGCTTAAGTTCGTAATGGATAATCCAGCAGGTAGCTTGGGTACATCAGGCGCTTGGTATGAGTGTCTAGCTCCCGGTTTGTCGGTAGGACTCAAGAACACGAGTATGCCTCGTTGCCTAACCTATAACGCAACTACAGGCGCTTTCACAGCAGCGGTGGTTGATTGGGCAGATCGTAACGTTGGTACTAACACTACTAACCCAATGCCTAGCTTTGTAGGTTATCCTATCACAGATATCAGCATGTTCCAGTCTAGGCTTATAGTCTTGGCAGGTCCTAACCTGATTGCATCTAGGAGTAAGCGGTATGAAGACTTCTTCGTGGGGTCAGCTAGTACCCTTGTGGATAGTGATCCTCTGGATCTTACCAGTCAGGCTGCCTTTGCTAGCACTCTCAAGTATGCTATCCCTCATAACAAAGACTTGGTTATCTTTAGTACGAAGGGCCAGTTTATTCTATTCGGTAGGTCGGCAATTACTCCGTCGAATGCTGCGCTAGTTCTGACTACCAGCTTCGAAGCTGACTTGATGGCTAGACCACAAGCATGTGGACGTAACGTATTCTTTGCTACCAAGTATGGTCGCTTTGCAGGCGTACGTGAGTTCTACACTGAGGGCGGTACGGATATTAACGACACTCGATCGATTACTCAGCACGTCAATAAGTACATGGTGGGAAGTACGGTTCACATGTCAGCAACGTCTAACTATGACCACCTGCTTGTGCACACTGATAACGATCGTAAGAACGTGTATGTATACCAGTTCATCTGGAATGATCAGGAGAAGATACAGTCAGCATGGTCCAAGTGGCAGTTCAGTCATGAGATCGTGTATTCGTTCTTTGATGACGAGTTGATTTATCTGATCATGCAGATCGGTACTACGTACTACCTGTTGCGCCTGTCTCTTGATACCGTGCCGGAAGGTGCGCTGGATTATCACGTCCACCTAGACGCTCGCTTCGATGTGACCGGAGTTAACACAGCATTCGTGCTTCCGTTCGACTGGCTTGCAGACGTACCATTGACTATCGTACAGGGTGACGATTGCCCGCATCCCGGCCTACCAGTGCGCATTAGCAGCATTGTGTATGATCCCGGCGAGGCTGGCTACGTTGTCACTATGCGAGAGGATATGATGGGCGGGGATATTATCGTGGGCGTTAATATGCTCAGCGAGTATCAGCCTACTATGCCTCGTGCTAAGGACAGTGATGGTGTTGTTATCAGCAATGCACGACTGGTTATTAATCAGTTCCTCGTGTCGCTTGCAGGTACGGGTGAGATCAATGGGCAGAAGATGACTGCATGGGGAGATGGACCAGAGGTATCCTTCCAAGGTTATATTACCAATAGTCCCGGCTCTATGACAGGCAGTCCTGCACTAGATGACCACATATTCAAGATGCCGTTCAAAGCTAAGGCTGATGAGGCAGAAGTACGTTTCTATACAGATAGCCATTGGCCTATGACCATTCTGGATATCGAGTGGGAAGGAACCATTAACAAGCGCGGTAAGCGCATCCCTGTAGGAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b69a299116ce43c84ee2b558f6d1d035c38c9a103fdcbd4b104c3ac13d4ba71f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3007
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank