Protein

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Genbank accession
QYC50928.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MAYLKAYDKEGNLIAVGEQAKGDKGYITLKNLEPHKKYEQGSFTIKWVSDDFETEGIFSPEFSTHDSEYKEFMFYTKDILKVQGLSAYQTAVKNGYTGTEEEWVQSIKGDKGDKMTFEDLSDNDKEELKGEQGLQGVRGDAPNSLKVNAEYDVTVLQPIATGEFNAMRYFRDTSNTDEFMKGYDNYVARYGTSEVIKTIKEDYSNVTKGSIKVSEGNDNAYSLEVGTTVEHTFNGYSISMTSNTGTNGGMWKASIDGTFVKNISTWFDGVGTVTTQLIADNLTNTEHTLTLEFIGQDPEHPITSPRGWIRTGKYNKSYSTFTILKKENVTGFSKVIDVAYPVSNKEYAICVRPKGSTGSPEFFPYHGTQTSFKGENYVRQLIVDGQEVDLTRGSENIQFKEARLIQKIEHKLPTDTSIRMECTFIVTFKDSKVYNDIRFKWIQPSQITSGYVFQMPFDYNWFNSVVVDLVEQVNKSDEFGSQSDFNNDNAKVYTGFSNNEVGKDYIYQCVINKASIPVDRLWLQHRDERLQKLYPQYYNMTNKEPGDIDVFSGYYEILKIKDANKIYKI
Physico‐chemical
properties
protein length:569 AA
molecular weight: 64832,46390 Da
isoelectric point:5,14242
aromaticity:0,12654
hydropathy:-0,63163

Domains

Domains [InterPro]
DC_1109
ATT
60–200
DC_1109 DC_1117
DC_1309
STR
161–330
DC_1309
G3DSA:2.60.120.260
STR
195–303
G3DSA:2.60.120.260
QYC50928.1
1 569
Architecture
ATT
STR
RBD
ATT 60-200 | STR 201-330 | RBD 331-567 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QYC50928.1
1 569
Domain Start End Length (AA) Confidence
N-terminal 1 153 153 0,9188
Central domain 154 372 220 0,7054
C-terminal 373 569 196 0,3342
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-153
Central
154-372
C-terminal
373-569

Taxonomy

  Name Taxonomy ID Lineage
Phage Mammaliicoccus phage vB_MscM-PMS3
[NCBI] 		2861056 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Mammaliicoccus sciuri
[NCBI] 		1296 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYC50928.1 [NCBI]
Genbank nucleotide accession
MZ573780.2 [NCBI]
CDS location
range 12325 -> 14034
strand -
CDS
ATGGCATATTTAAAAGCTTATGATAAAGAAGGTAATCTTATTGCAGTTGGTGAACAAGCTAAAGGTGATAAAGGTTATATAACATTAAAGAACCTAGAACCACATAAAAAATATGAACAAGGTTCTTTTACAATTAAATGGGTAAGTGATGACTTTGAGACAGAGGGTATATTTAGTCCAGAGTTTAGTACTCATGATAGTGAGTATAAAGAATTTATGTTTTATACTAAAGACATTTTAAAAGTACAAGGCTTATCTGCCTACCAAACGGCAGTTAAAAATGGTTATACAGGAACGGAAGAAGAATGGGTACAATCTATTAAGGGTGACAAAGGTGACAAAATGACCTTTGAGGATTTATCAGATAATGATAAGGAAGAATTAAAGGGTGAACAAGGATTACAAGGTGTTAGGGGTGATGCACCTAATTCATTAAAAGTTAATGCAGAGTATGATGTTACAGTATTACAACCTATAGCTACTGGTGAATTTAACGCTATGAGATATTTTAGGGATACTTCAAATACCGATGAATTTATGAAAGGGTATGACAACTATGTAGCTAGGTATGGTACATCAGAAGTTATAAAAACTATCAAAGAAGATTATTCTAATGTTACAAAAGGTTCAATAAAAGTATCAGAAGGAAACGATAACGCTTACTCTTTAGAAGTAGGTACAACAGTAGAGCATACATTTAATGGATATTCAATATCTATGACTTCAAACACAGGTACAAATGGTGGCATGTGGAAGGCTAGTATTGATGGCACTTTTGTTAAGAATATAAGTACTTGGTTCGATGGGGTAGGTACAGTTACTACTCAACTTATTGCCGATAACTTAACTAACACAGAACATACTTTGACATTAGAATTTATTGGGCAAGACCCAGAACACCCAATTACAAGTCCTAGAGGTTGGATAAGAACTGGAAAATATAATAAGTCTTATAGCACTTTTACAATACTAAAAAAAGAAAATGTAACAGGATTTAGTAAGGTTATTGATGTAGCTTACCCAGTTAGCAATAAAGAATATGCTATATGTGTTAGACCTAAAGGTAGCACTGGAAGTCCAGAGTTCTTCCCTTATCATGGTACACAAACTTCTTTTAAAGGTGAAAACTATGTAAGACAATTAATAGTAGATGGTCAAGAAGTAGATTTAACTAGAGGGTCAGAAAACATACAATTTAAAGAGGCAAGATTAATACAAAAAATAGAACATAAATTACCTACTGACACATCTATAAGAATGGAATGTACTTTTATTGTTACTTTCAAAGATAGTAAAGTATACAATGACATTAGGTTCAAGTGGATACAACCTAGTCAAATAACAAGTGGTTATGTATTCCAAATGCCTTTTGATTATAATTGGTTTAATTCAGTGGTTGTTGATTTAGTAGAGCAAGTAAATAAATCAGATGAGTTTGGTTCCCAATCAGACTTTAATAATGATAACGCAAAAGTATACACAGGTTTCTCTAATAATGAGGTTGGTAAAGACTACATTTATCAATGTGTAATCAATAAGGCATCTATTCCTGTAGATAGGCTTTGGTTACAACATAGAGATGAGAGATTACAAAAACTATACCCACAATATTACAATATGACAAATAAAGAGCCTGGAGATATAGATGTTTTTAGTGGTTACTATGAAATACTGAAGATTAAAGATGCTAATAAGATATATAAAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e6f8c3138aca516b874074609ffc780c7178f212c4c6116749396cfebb8af361
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6382
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Mammalicoccus virus vB_MscM-PMS3 infecting Mammalicoccus sciuri Kwon,H., Park,S.Y. and Kim,J.H. 2023-12-11 — GenBank