Protein

View in Explore
Genbank accession
QNH72037.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MAKKRLSQLPVATAPQIAEASILLLTANNEEVQAPITRALGGTRAILTLDQTQSVDFRLISPNNVVEDITATVVVNKGLTGQITKTAKTDANGAGTIEFPTLARGQTYTVDLSFSTFLAVKRTDWFIALLAAATVAPSATSTGLVGDLITIDKGTWSGTPTQYLFRYLRGAYVIPGANADTYRLTADDADDIITPQVMAVNAGGNSTWVSCNTIGPVANKATTLVRAPVIAGNGDLGGHFTITDPGEASNFAVPTTDEWEANAALIPSDKLTATRYLNYVPSLSPGVPSSMAAAPAADNHNFNLNVSTYTGTNDMSLPIAGSATENDYIYSTTTEPGVNGGNSGPQTWDITLKHGPTATSIREQMFIARVDSTGAVIGAEIQCARVGAAAGSEYAEFQPLQNGVYTFRVVNDFGKWNAGDRVRWRMRHRNTSGSSGNVRITVTSGPSFATLPIGPRKTLTNSRIFFTSTTALAGKTLRLKRTFSNGAYTITAYSNEIVLDAAVAQTVAPVNTLAPSLYTTTEFRQNTNVYVDVGQWDNQPTDIALQWMRDGVDLAGEIGTYHAIAAADIGHELTCRVTPSNAIGSTPVVTAPIVALPPRVYFDIAAGNDASDGQSTATAKQTSATSGSLTSGSSAAFKANGVWANRLLIGSNIRYESYDVGAKPQFGVAGVAFTIDSYTDDGSLGRSGVTLDGLSIIADQRGLQTRQGASWTVQNCLFDDIGFRPPSGQQENTQGMMFYKTNHLKILNNFMDRVYNDDLYIDTCNNVLINGNTIMPCFGAEGDNIQTRADRTDPHQIGIEIGHNYLDMGSRKTGSGKGCIVTNMQSYAYIHDNILIGNNFGHGTDEGHHHVCARNRMRHARKNSYSWLIGIGGYDNQPYSSDHQMYDNYLEDANRGHAYTGIGVSNYTGPLSARADMRCYDETIVNCTVGLRIDRPTSGIFRGWVFHNVGTPINRVNTTYVNEGTIHDFISGDHWIYKGAISRPPEVITRATITGTRQVGQVLTGDAAVFDTAEVLAAFPGAVITRSFQWRRHARMPFPYTGYYLPFYGHGCDWIEGATADSYQIAAEDVGCLVSRVERIHLTFTEGGVEKVVTALAYDGSYVGSAEIIA
Physico‐chemical
properties
protein length:1110 AA
molecular weight: 119329,80740 Da
isoelectric point:5,71609
aromaticity:0,08739
hydropathy:-0,18685

Domains

Domains [InterPro]
DC_1007
ATT
113–247
DC_1007 DC_1007 IPR011050 G3DSA:2.60.40.2700
DC_2223
STR
595–694
DC_2223 DC_0572
QNH72037.1
1 1110
Architecture
ATT
ATT
STR
RBD
ATT 113-247 | ATT 490-619 | STR 620-965 | RBD 966-1110
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QNH72037.1
1 1110
Domain Start End Length (AA) Confidence
N-terminal 1 228 228 0,8611
Central domain 229 427 200 0,4620
C-terminal 428 1110 682 0,2277
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-228
Central
229-427
C-terminal
428-1110

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage P11VFA
[NCBI] 		2763530 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QNH72037.1 [NCBI]
Genbank nucleotide accession
MT778840.1 [NCBI]
CDS location
range 99403 -> 102735
strand -
CDS
ATGGCCAAGAAGAGACTTTCACAGCTTCCCGTGGCGACGGCACCGCAGATTGCGGAAGCATCGATCCTCCTGCTGACCGCGAACAACGAAGAGGTGCAGGCACCGATCACCCGCGCGCTCGGCGGCACCCGTGCAATCCTGACCCTGGACCAGACGCAGAGCGTCGATTTCCGCCTGATCAGCCCGAACAACGTGGTCGAAGACATCACGGCAACGGTCGTGGTCAACAAGGGACTGACCGGCCAGATCACCAAGACGGCCAAGACCGACGCCAATGGCGCTGGCACCATCGAGTTCCCCACGCTTGCGCGCGGTCAGACCTACACGGTTGACCTGTCTTTCTCCACGTTCCTTGCTGTCAAGCGCACCGATTGGTTCATCGCACTGCTGGCCGCTGCAACTGTTGCACCGTCCGCCACGTCCACCGGCCTCGTCGGCGACCTGATCACCATCGACAAGGGCACCTGGAGCGGCACCCCAACGCAGTACCTGTTCCGCTATCTGCGCGGCGCATACGTCATCCCAGGCGCGAATGCCGACACCTACCGTCTGACCGCTGACGACGCCGACGACATCATCACGCCGCAGGTTATGGCGGTAAATGCGGGCGGCAACAGCACCTGGGTAAGCTGCAACACCATCGGCCCGGTCGCGAACAAGGCCACAACGTTGGTCCGCGCTCCTGTCATCGCTGGCAACGGCGACCTCGGCGGTCACTTCACCATCACCGATCCCGGCGAAGCAAGCAATTTTGCTGTCCCGACCACGGATGAATGGGAGGCGAACGCCGCACTCATTCCTTCCGACAAGCTGACGGCCACGCGCTACCTCAACTACGTGCCTTCCCTGTCGCCGGGCGTGCCTTCGTCCATGGCGGCTGCTCCCGCCGCTGACAACCACAATTTTAACCTTAACGTCAGCACCTACACCGGCACGAATGATATGTCGTTGCCGATTGCTGGTAGCGCAACGGAAAACGACTATATCTACAGCACCACCACCGAGCCCGGCGTCAACGGAGGTAACTCCGGCCCGCAGACCTGGGATATCACCCTGAAGCACGGCCCGACCGCTACCTCCATTCGCGAACAGATGTTCATCGCACGCGTGGATAGCACTGGCGCTGTCATCGGCGCTGAAATCCAGTGCGCTCGCGTCGGCGCGGCGGCAGGATCGGAGTATGCCGAGTTCCAGCCCTTGCAGAACGGCGTCTACACCTTCCGTGTCGTCAATGACTTTGGCAAGTGGAATGCTGGCGACCGTGTTCGTTGGCGCATGCGTCACAGGAATACGAGCGGCTCCTCTGGTAACGTCCGCATCACGGTTACCAGCGGCCCGTCGTTTGCTACCCTTCCGATTGGCCCGAGAAAGACGCTGACGAACAGCCGTATCTTCTTCACGTCCACGACGGCGCTGGCAGGCAAGACGCTCCGCCTGAAGCGTACCTTCTCGAATGGTGCCTACACGATCACGGCCTACAGCAACGAAATCGTCCTGGACGCTGCCGTGGCTCAGACCGTAGCGCCGGTCAACACGCTTGCGCCGTCGCTCTACACGACAACCGAGTTTCGTCAGAACACCAACGTCTACGTCGATGTCGGCCAGTGGGATAATCAGCCCACGGATATCGCCTTGCAGTGGATGCGCGACGGCGTAGACCTCGCAGGCGAGATCGGCACCTACCATGCCATCGCGGCGGCTGACATCGGTCACGAACTGACGTGCCGTGTCACCCCCTCCAACGCCATCGGCTCGACGCCCGTGGTAACCGCGCCCATCGTCGCCCTGCCGCCGCGCGTTTACTTCGACATCGCCGCAGGTAACGACGCCAGTGACGGCCAGTCCACCGCGACGGCGAAACAGACCTCTGCCACCTCCGGCTCGCTCACCTCCGGTTCGTCGGCAGCGTTCAAGGCCAATGGTGTATGGGCGAACCGCCTCCTGATCGGCAGCAACATCCGCTACGAGAGCTACGACGTGGGCGCGAAGCCTCAGTTCGGCGTGGCTGGCGTGGCCTTCACCATCGACAGTTACACCGACGATGGCTCGCTCGGAAGGTCTGGCGTCACTCTTGACGGTCTCTCCATTATCGCCGACCAGCGTGGTCTTCAGACACGCCAGGGCGCTAGCTGGACCGTCCAGAACTGCCTGTTCGATGATATCGGCTTCCGCCCGCCGAGTGGTCAGCAGGAAAACACTCAGGGCATGATGTTCTACAAGACGAACCACCTGAAGATACTCAACAACTTCATGGATCGCGTGTACAACGACGACCTGTATATCGACACCTGCAACAACGTCCTGATCAATGGCAACACGATCATGCCGTGCTTCGGCGCGGAAGGCGACAACATCCAGACCCGTGCCGACCGTACCGATCCTCACCAGATCGGCATCGAGATCGGTCACAACTACCTCGACATGGGTTCGCGCAAGACGGGCTCGGGCAAGGGCTGCATCGTCACCAACATGCAGAGCTACGCCTACATCCATGACAACATCCTGATCGGCAATAACTTCGGACACGGCACCGACGAAGGTCATCACCATGTCTGCGCCCGTAACCGCATGCGCCATGCGCGCAAGAACTCTTACTCTTGGCTGATCGGCATCGGCGGTTACGACAACCAGCCGTATTCGTCCGACCACCAGATGTACGATAACTACCTGGAAGACGCGAACCGTGGCCACGCCTACACCGGCATCGGCGTCAGCAACTACACCGGGCCGCTCTCGGCTCGCGCTGACATGCGCTGCTACGACGAAACCATCGTCAACTGCACGGTCGGCCTCCGTATCGACCGCCCGACCTCCGGTATCTTCCGTGGTTGGGTCTTCCACAACGTCGGCACCCCGATCAACCGTGTGAACACGACCTACGTCAACGAAGGCACGATCCACGACTTCATCAGTGGCGATCACTGGATTTACAAGGGCGCTATCAGCCGTCCGCCGGAAGTCATCACCCGCGCGACCATCACTGGCACCCGTCAGGTCGGCCAAGTGCTCACGGGCGATGCTGCCGTCTTCGATACGGCGGAAGTCCTCGCTGCCTTCCCCGGCGCGGTCATCACCCGTTCCTTCCAGTGGCGTCGGCATGCTCGCATGCCGTTCCCCTACACCGGCTACTACCTGCCGTTCTACGGCCATGGCTGTGACTGGATCGAAGGTGCCACGGCAGACAGCTACCAGATCGCCGCAGAAGACGTTGGTTGCCTCGTCTCCCGCGTCGAGCGTATCCACCTCACCTTCACGGAAGGCGGCGTCGAGAAGGTCGTTACCGCACTGGCATACGACGGCAGCTATGTCGGATCGGCAGAGATCATCGCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c9d32786a1a2e91671c3160409a85ed62fbb3981967066117c1a2d74dd8e2e0e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2796
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Rhizobium leguminosarum bacteriophage vB_RlegS_P11VFA Gunathilake,D., Bhat,S., Yost,C.K. and Hynes,M.F. 2020-03-12 — GenBank