Protein

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Genbank accession
YP_009795322.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MIYPILRESRVVIEYEGRAFTMDALSSFSGSTSYGEYKSLRKTIHNRSNYAYSKIVQQEPSSISIQTPFTMGGVEGLLLHLLGWDTDKIPYEMPKFNRSVTPKMFNIYLCFKELDYICFTNCYLSAMDIVLEKSVPSISLGFESGNFYEGTYPPQGSMIQGDVMPFYPVSVLYDNTETPGLVSASISLQQQCEWIDNRSIHSIGTIYSNSQAYVRELNVSATVSTYMVSRLSGQSVLLPEYAPITIRNNIFSLNIPLARITKRADFSDVFKLEYDIIPTEDSDPVTISFMEKIR
Physico‐chemical
properties
protein length:294 AA
molecular weight: 33326,62990 Da
isoelectric point:5,10229
aromaticity:0,11905
hydropathy:-0,10340

Domains

Domains [InterPro]
IPR056389
ATT
1–293
IPR056389
YP_009795322.1
1 294
Architecture
ATT
ATT 1-293 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009795322.1
1 294
Domain Start End Length (AA) Confidence
N-terminal 1 84 84 0,8244
Central domain 85 283 200 0,0382
C-terminal 284 294 10 0,7733
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-84
Central
85-283
C-terminal
284-294

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage DU_PP_V
[NCBI] 		2041492 Uroviricota > Caudoviricetes > Demerecviridae > Hongcheonvirus > Hongcheonvirus DUPPV
Host Pectobacterium sp.
[NCBI] 		1913084 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009795322.1 [NCBI]
Genbank nucleotide accession
NC_047887 [NCBI]
CDS location
range 94423 -> 95307
strand -
CDS
ATGATTTACCCTATTCTTAGAGAGTCTAGGGTAGTTATTGAGTACGAGGGTAGAGCATTCACTATGGATGCTTTATCTTCCTTTTCTGGTAGCACGTCTTATGGGGAGTACAAATCTTTAAGGAAGACTATTCATAATAGATCTAACTACGCGTACTCTAAGATAGTTCAACAGGAGCCTAGCAGTATTAGCATCCAAACCCCGTTCACTATGGGTGGAGTAGAAGGTCTTCTTTTACATCTTCTAGGATGGGATACTGATAAAATCCCCTATGAGATGCCAAAATTTAACCGCTCAGTAACTCCTAAGATGTTCAATATTTATCTATGTTTTAAAGAGTTAGACTACATCTGTTTTACTAATTGCTACTTATCAGCTATGGACATTGTTCTAGAGAAGAGTGTTCCATCAATAAGTCTAGGTTTTGAATCGGGCAACTTTTATGAAGGTACGTATCCTCCTCAAGGAAGTATGATTCAAGGCGATGTTATGCCCTTTTATCCTGTTTCTGTACTATACGATAACACAGAAACTCCGGGTCTTGTATCTGCTAGCATATCTTTACAACAGCAATGTGAGTGGATAGATAACCGATCTATACACAGTATAGGCACTATATACTCTAACTCTCAAGCTTACGTTAGAGAATTAAATGTGTCCGCTACTGTATCTACCTACATGGTTAGTAGACTAAGTGGGCAATCGGTTCTTTTACCGGAATACGCACCTATTACAATAAGAAATAATATATTTAGTCTTAACATACCTTTAGCCCGAATAACCAAAAGAGCTGATTTCTCAGATGTTTTCAAACTAGAGTATGACATAATACCTACTGAGGATTCAGACCCTGTAACAATATCATTTATGGAGAAAATAAGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
beae8d78c61805ee4fdecce719f347dc31e8fe1ece257bec95627bb1bf8a3f6d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8074
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage (DU_PP_V) infecting Pectobacterium spp. Park,T.-H. 2017-11-22 — GenBank