Protein

View in Explore
Genbank accession
ATN93649.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MASALPEQNKWEPSIYQLEKDTPVLGGQGGPDNIQAEQLANRTQYLKTEISRLNDLTMSATAAYDSKEKAQQAIDAGTETRRFFTVWSSLSRFWTEKYENVNGIATPTGERLPNSELVEYLSPIVEYLNLVVPSTQANKIQGYHILATDVSGKVGLYGVNDNGGFEVCGVEGSIQDYLLNLVSNAFSSKITGYQYIWLTADKKTAVAAIDDNGYLWLAGMDEPVQTAIANAGGKGAERLSRPDGTGKIALFATEDDTAPLWAKSPVVSAEKVTDSGISFVYNESGVLKSALIPIMPLQNSATETIREINNASQEMHAHVGRGQSLSVGANGGAVAALSELFGYCLMFSGAGKDRGAGIDGDVTDESLGALCDARIINFRNNSQVPAAQTVLLNHLSRSAPMPIIVTRLDSRGGFNYSQLKKGTQPYIDGMTSFDAFCNRAESIGKKPMCKVIKITHGEADANKATLQFGEYKGYLVEWADDTQHDMMARSGQQAKPSIEIDQVGSLTNTTVINGITQRGYVVAIDQWEFTKERAEAFMSIPKWLLNRLYPQDFLHLTGLGYRILGEYHGLAEDWTIYDRVNNPSGAKFKPVQPETIERINATTFDITFSSPYGLPLQVKAINGITAPNLGCDLQNGSANVLSAVQRSDFVFRFTTDVEPAGSDYFRFGCNATDNGTNSYPLINIVDTSTRVSRYDPALVLINPCAISRIAVI
Physico‐chemical
properties
protein length:712 AA
molecular weight: 77529,23880 Da
isoelectric point:5,07285
aromaticity:0,08708
hydropathy:-0,23610

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATN93649.1
1 712
Domain Start End Length (AA) Confidence
N-terminal 1 568 568 0,6117
Central domain 569 701 134 0,3965
C-terminal 702 712 10 0,9898
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-568
Central
569-701
C-terminal
702-712

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage VW-6B
[NCBI] 		2041486 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa HIM-6
[NCBI] 		29322 Bacillota > Clostridia > Eubacteriales > Eubacteriaceae > Eubacterium >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATN93649.1 [NCBI]
Genbank nucleotide accession
MF975721.1 [NCBI]
CDS location
range 32133 -> 34271
strand +
CDS
ATGGCCAGCGCACTGCCAGAGCAAAACAAATGGGAACCCTCTATTTATCAGCTTGAGAAGGACACGCCGGTACTGGGGGGCCAGGGCGGCCCCGATAATATTCAGGCTGAACAACTTGCAAATCGGACTCAATATTTAAAAACTGAAATCAGTCGTCTTAATGACCTGACGATGAGTGCGACGGCGGCTTATGACAGTAAAGAAAAGGCTCAGCAAGCCATCGACGCCGGGACTGAAACGCGGCGTTTCTTTACTGTATGGTCGTCGCTATCGCGCTTTTGGACTGAAAAATACGAGAATGTGAATGGTATTGCCACTCCAACAGGCGAACGGCTACCAAATTCAGAATTGGTAGAGTATTTATCGCCCATCGTTGAATACCTGAACCTTGTCGTGCCATCAACACAGGCAAACAAAATTCAGGGCTATCACATTTTGGCAACTGATGTGTCGGGTAAGGTTGGCCTTTATGGCGTCAATGATAATGGTGGGTTTGAGGTTTGTGGGGTTGAGGGTAGTATTCAGGATTACCTTTTAAATCTTGTCAGTAATGCATTTTCGTCCAAAATAACCGGGTACCAATATATCTGGCTAACGGCAGATAAAAAAACCGCTGTAGCAGCCATAGACGATAACGGTTATTTATGGCTGGCAGGAATGGACGAGCCAGTACAAACTGCCATCGCAAATGCGGGTGGCAAGGGTGCTGAACGTTTATCCCGCCCTGATGGCACAGGGAAAATTGCGTTATTTGCAACCGAAGACGACACAGCACCTTTATGGGCAAAAAGCCCCGTAGTCTCCGCAGAGAAAGTGACTGACTCGGGAATTTCGTTTGTTTACAACGAAAGTGGCGTACTCAAATCGGCGTTAATACCCATAATGCCGCTACAGAATAGTGCGACTGAAACGATACGCGAGATTAATAACGCATCACAAGAAATGCACGCTCATGTAGGACGCGGACAATCTCTCAGTGTGGGGGCCAATGGCGGCGCTGTCGCAGCATTATCTGAACTGTTCGGATATTGCCTGATGTTTTCAGGTGCGGGCAAAGACCGAGGTGCCGGTATTGATGGCGATGTGACTGATGAGTCATTAGGCGCTCTATGCGATGCCAGGATAATCAACTTCCGAAATAATTCTCAAGTCCCGGCCGCTCAAACAGTGTTGCTCAATCATCTGTCGCGCAGTGCCCCTATGCCCATCATTGTTACACGGCTGGATTCTCGAGGCGGGTTTAATTACAGCCAGTTAAAAAAAGGGACTCAACCGTATATAGATGGCATGACGTCATTTGATGCATTCTGTAACCGAGCTGAGTCAATTGGTAAAAAGCCAATGTGCAAGGTTATTAAAATAACGCATGGCGAGGCTGACGCGAACAAGGCCACTTTGCAATTTGGTGAATATAAAGGATATCTCGTCGAGTGGGCTGATGACACGCAGCATGACATGATGGCCCGCTCTGGCCAGCAAGCAAAACCGTCGATTGAGATTGATCAGGTCGGCTCGCTGACCAATACCACAGTCATAAACGGCATTACTCAGCGTGGTTATGTTGTTGCAATAGACCAGTGGGAATTTACAAAAGAGCGTGCAGAGGCATTTATGAGCATCCCGAAATGGCTGCTCAATCGTTTATACCCGCAGGATTTCCTCCATTTGACGGGCCTGGGTTATCGCATTCTCGGTGAATATCATGGGCTGGCCGAGGATTGGACAATTTACGATCGCGTTAACAATCCTTCTGGCGCTAAGTTTAAACCAGTACAACCGGAAACAATTGAACGAATCAATGCAACGACGTTTGATATTACGTTTAGCTCCCCGTATGGGTTGCCGCTGCAAGTTAAAGCGATCAACGGTATCACGGCCCCCAATCTGGGGTGTGACCTGCAGAATGGTTCGGCTAACGTCCTGTCAGCTGTTCAACGAAGTGATTTCGTTTTCAGGTTTACGACTGATGTCGAGCCAGCTGGTAGCGATTATTTCCGCTTCGGTTGCAATGCGACTGATAACGGTACTAACAGCTATCCGCTCATCAACATCGTTGATACATCAACGCGAGTTAGCCGTTACGACCCTGCGCTTGTTTTGATTAACCCATGTGCCATTTCACGTATTGCAGTGATTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7f50c689ffd78938ad145b752fbf44e5f7c706bd6260a074544e745cae6bb60b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7678
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of the cold-active bacteriophageVW-6S and VW-6B from Pseudomonas fluorescens Ji,X., Li,J., Wei,Y., Zhang,Q. and Lin,L. 2020-05 — GenBank