Protein

View in Explore
Genbank accession
AIS73480.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MSNNTYQHVSNESKYVKFDPTGSNFPDTVTTVQSALSKISNIGVNGIPDATMEVKGIAMIASEQEVLDGTNNSKIVTPATLATRLLYPNATETKYGLTRYSTNEETLEGSDNNSSITPQKLKYHTDDVFQNRYSSESSNGVIKISSTPAALAGVDDTTAMTPLKTQKLAIKLISQIAPSEDTASESVRGVVQLSTVAQTRQGTLREGYAISPYTFMNSVATQEYKGVIRLGTQSEINSNLGDVAVTGETLNGRGATGSMRGVVKLTTQAGIAPEGDGSGALAWNADVINTRGGQTINGSLNLDHLTANGIWSRGGMWKNGDQPVATERYASERVPVGTIMMFAGDSAPPGWIMCHGGTVSGDQYPDYRNTVGTRFGGDWNNPGIPDMRGLFVRGAGTGGHILNQRGQDGYGKDRLGVGCDGMHVGGVQAQQMSYHKHAGGWGEYQRHEAPFGASVYQGYLGTRKYADWDNASYFTNDGFELGGPRDALGTLNREGLIGYETRPWNISLNYIIKIHY
Physico‐chemical
properties
protein length:516 AA
molecular weight: 55419,78830 Da
isoelectric point:5,84762
aromaticity:0,07946
hydropathy:-0,47248

Domains

Domains [InterPro]
DC_0176
STR
1–437
DC_0176
IPR015173
STR
246–324
IPR015173 IPR037053 IPR044916
G3DSA:2.10.280.10
Unmapped
246–286
G3DSA:2.10.280.10 SSF88874
SSF69349
STR
246–346
SSF69349 IPR027448
IPR011083
ATT
337–392
IPR011083
AIS73480.1
1 516
Architecture
STR
ATT
STR
STR 1-323 | ATT 324-392 | STR 393-514 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage pSs-1
[NCBI] 		1551641 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tequatrovirus
Host Shigella sonnei
[NCBI] 		624 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIS73480.1 [NCBI]
Genbank nucleotide accession
KM501444 [NCBI]
CDS location
range 91804 -> 93354
strand +
CDS
ATGAGTAACAATACATATCAGCACGTATCAAATGAATCAAAATATGTTAAATTCGATCCTACTGGATCGAATTTTCCTGACACTGTCACGACAGTGCAGTCTGCATTATCAAAAATAAGTAATATCGGCGTAAATGGTATTCCTGATGCAACTATGGAAGTTAAAGGAATAGCAATGATTGCGTCAGAGCAAGAGGTTTTAGATGGAACTAATAATTCTAAAATCGTTACACCCGCTACATTAGCAACAAGATTATTGTATCCAAATGCTACTGAAACTAAATATGGTTTAACGCGCTATTCAACAAATGAAGAAACATTAGAAGGCTCAGATAATAATTCATCAATAACGCCGCAAAAACTGAAATACCATACTGACGATGTGTTCCAAAATAGATATTCGTCTGAGTCATCAAATGGAGTTATTAAAATATCATCTACACCTGCGGCTTTGGCTGGTGTAGATGATACTACGGCAATGACTCCATTAAAAACCCAAAAACTTGCAATAAAATTAATTTCACAAATAGCTCCTTCAGAAGACACAGCATCAGAATCTGTTAGAGGTGTAGTTCAGTTATCAACTGTCGCTCAAACTCGTCAAGGAACTCTTCGCGAAGGATATGCAATTTCCCCATATACCTTTATGAATTCCGTTGCAACACAAGAATATAAGGGTGTTATACGTTTAGGAACGCAGTCGGAAATTAACAGTAATTTGGGAGATGTTGCAGTAACAGGCGAAACATTAAATGGTCGAGGAGCTACTGGTTCTATGCGCGGTGTAGTAAAATTAACGACGCAAGCCGGTATTGCCCCCGAGGGTGATGGCTCTGGAGCATTAGCATGGAACGCAGATGTAATTAATACACGCGGTGGACAAACTATTAATGGTTCTTTAAATTTAGACCATCTTACAGCAAATGGAATTTGGTCGCGCGGCGGTATGTGGAAAAATGGTGATCAACCTGTTGCCACTGAAAGATATGCGTCTGAAAGGGTTCCAGTTGGAACTATTATGATGTTTGCGGGTGATTCTGCACCTCCAGGTTGGATTATGTGCCACGGTGGAACCGTGTCAGGAGATCAATATCCTGATTATAGAAACACAGTTGGAACAAGATTTGGTGGTGATTGGAATAACCCTGGCATTCCTGATATGCGAGGTCTTTTCGTCAGAGGAGCTGGCACAGGAGGTCATATTTTAAATCAACGAGGACAAGATGGTTATGGAAAGGATAGACTTGGCGTAGGATGTGACGGAATGCATGTTGGCGGTGTTCAAGCACAACAAATGTCATACCATAAACATGCTGGTGGCTGGGGAGAATACCAAAGACATGAAGCTCCATTTGGCGCGTCCGTTTATCAAGGATATCTTGGAACTAGAAAATATGCCGACTGGGATAACGCTTCATACTTCACTAATGATGGATTTGAATTAGGTGGACCGAGAGATGCCCTTGGTACACTTAATCGTGAAGGATTAATTGGTTATGAAACTAGACCATGGAATATATCATTAAACTATATTATTAAAATTCATTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
adc0d70c4563248dc2b912fbb0153061c589624d442f2cd4e8574a8a88667f4e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6716
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage application to control the contaminated water with Shigella Jun,J.W., Giri,S.S., Kim,H.J., Yun,S.K., Chi,C., Chai,J.Y., Lee,B.C. and Park,S.C. 2016 26971572 GenBank
Characterization and complete genome sequence of the Shigella sonnei bacteriophage pSs-1 Jun,J.W. and Park,S.C. 2013-12 — GenBank