Protein

View in Explore
Genbank accession
YP_007236804.1 [GenBank]
Protein name
pectin lyase activity
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTSSLQSRVEKFDQTVTNVDAWARGDANTSVDFGGGPVRSPAKLIADLDKSVNESVNAALNPDIQPVPESLDGTETWSFKKAGAWARARLSDIANFVLSVFTLTVGTATGIIGRTILAELLDLPVSVKRFGAKGNGVRLLDGAVSAGSKAFTSASASFTASDVGKAISVVGAGTGGAVLRTTISAFVSPTAVTLTAAASTAVTGAVATYGADDTTAVQNAVNYCAQPKRTLKLYFPSSIYYLGAEIVSLAPLLVSVVDPSPKNVGEADIGGGSWLFFAHSGKGFSALTTNGNYKGVTFRNIGTFRDQPPPASSWAPYDHDFDFYSDGADDVTYDNVLTANPTRAFCVNRTNNGRATFNVRGDPFKVGISVDRMYDVARFDVHFWSFWKDDPNLLAYKHANLIGILLAKTDNAMMGRIFVIHALSALKVTQSASGTVTKLSVDQMDADICANAITFDSSVNSSSASIGVLKFQSATPSIPGSRMIYVQGTGVQLNIGFANGVQMGREGLRVEGANNIVRVNEFRCQIYDTDGANVPAVYCASGVGNKVFIGGYPDIGAAGGTGGKYGGGGYISVDDWRAWTATPSTSSGVLGTVGAVSGLYKMLNNTVKAEFDVGITTNGTGAGAVLLNYPYGSPSANFIGIGKEKNLNGKAVLVDAGQGTGNIQLRFYDNSYPGADGCRLVGNVEYSISI
Physico‐chemical
properties
protein length:690 AA
molecular weight: 72138,10330 Da
isoelectric point:6,26413
aromaticity:0,09275
hydropathy:0,03043

Domains

Domains [InterPro]
DC_0261
STR
1–125
DC_0261 DC_2088
IPR012334
STR
104–374
IPR012334
YP_007236804.1
1 690
Architecture
STR
RBD
STR 1-374 | RBD 395-689 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007236804.1
1 690
Domain Start End Length (AA) Confidence
N-terminal 1 212 212 0,6619
Central domain 213 571 360 0,9915
C-terminal 572 690 118 0,9944
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-212
Central
213-571
C-terminal
572-690

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage BcepMigl
[NCBI] 		2886899 Uroviricota > Caudoviricetes > Lessievirus >
Host Burkholderia cenocepacia
[NCBI] 		95486 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007236804.1 [NCBI]
Genbank nucleotide accession
NC_019917 [NCBI]
CDS location
range 35117 -> 37189
strand +
CDS
ATGACCTCATCACTACAAAGCCGCGTCGAGAAGTTCGACCAGACTGTCACGAATGTGGATGCGTGGGCGCGCGGGGATGCGAATACCTCCGTCGACTTTGGCGGCGGCCCGGTCCGCTCGCCGGCAAAGCTGATCGCCGACCTTGATAAGTCGGTCAACGAGTCCGTAAATGCCGCGCTGAACCCCGACATCCAGCCGGTTCCGGAGTCGCTGGATGGTACGGAAACGTGGTCATTCAAGAAGGCTGGCGCTTGGGCGCGCGCGAGGCTGTCGGACATCGCGAACTTCGTTCTGTCGGTTTTCACGCTGACGGTCGGCACGGCAACCGGGATTATCGGCCGAACGATCCTCGCGGAATTGCTGGACCTGCCGGTGAGCGTGAAGCGCTTCGGCGCGAAGGGAAACGGGGTTCGATTGCTGGATGGCGCAGTGTCCGCCGGCTCGAAAGCGTTCACTTCGGCATCGGCGTCGTTCACTGCATCCGACGTTGGCAAGGCCATTTCTGTTGTGGGGGCCGGCACCGGCGGCGCGGTTCTGCGCACCACCATTTCCGCCTTTGTGAGCCCGACTGCCGTCACGCTTACTGCCGCAGCTTCGACGGCCGTGACCGGCGCCGTAGCGACGTATGGCGCCGACGACACCACGGCTGTTCAGAATGCAGTGAACTACTGCGCGCAGCCTAAACGGACGCTCAAGCTCTACTTCCCGTCGTCTATCTACTATCTCGGCGCCGAGATCGTTTCGCTCGCGCCGCTGCTCGTATCGGTTGTCGACCCGAGCCCGAAGAATGTCGGCGAGGCAGACATCGGCGGCGGTTCGTGGCTGTTCTTCGCCCACTCTGGCAAGGGCTTTTCCGCACTCACGACGAACGGGAATTACAAGGGCGTGACGTTCCGAAACATCGGCACGTTCCGCGATCAGCCGCCGCCGGCATCCTCCTGGGCGCCATACGACCACGACTTCGATTTCTATTCTGACGGAGCGGACGATGTGACCTACGACAACGTTCTGACGGCGAATCCGACGCGCGCATTTTGCGTGAACCGCACGAACAACGGGCGCGCGACGTTCAACGTTCGCGGCGACCCGTTTAAGGTCGGAATTTCTGTTGACCGAATGTACGATGTCGCACGGTTTGACGTGCATTTCTGGTCCTTCTGGAAGGATGACCCGAACCTCTTGGCATACAAGCACGCCAACCTGATCGGCATTCTTCTGGCGAAAACCGATAACGCGATGATGGGGCGCATCTTCGTCATCCATGCGCTTTCCGCGCTCAAGGTTACGCAAAGCGCATCCGGCACCGTTACCAAACTGAGTGTCGATCAAATGGACGCTGATATTTGCGCGAACGCGATTACGTTTGACTCCAGCGTAAACAGTTCCAGCGCATCTATTGGCGTGCTGAAGTTTCAAAGCGCTACGCCGTCGATTCCTGGTTCGCGCATGATCTACGTTCAAGGGACCGGCGTTCAGCTTAATATCGGGTTCGCTAACGGCGTGCAGATGGGCCGCGAAGGCCTGCGTGTCGAAGGGGCCAACAATATCGTTCGCGTCAACGAATTCCGCTGCCAGATTTACGACACGGACGGCGCGAACGTTCCCGCCGTGTACTGCGCGAGCGGTGTCGGCAACAAGGTTTTCATCGGTGGATACCCGGACATCGGCGCGGCCGGCGGTACCGGCGGGAAGTATGGTGGCGGCGGTTACATCAGCGTGGATGATTGGCGTGCATGGACCGCGACGCCTTCGACGTCGAGCGGCGTGCTTGGGACGGTAGGCGCAGTGTCCGGGCTGTACAAGATGCTCAACAACACCGTGAAGGCGGAATTCGATGTTGGCATCACGACGAACGGCACGGGCGCCGGCGCGGTCTTGCTGAACTACCCGTATGGCTCGCCGTCTGCGAACTTCATCGGTATCGGCAAGGAGAAGAACCTGAACGGGAAGGCAGTCCTTGTAGATGCCGGCCAGGGCACCGGGAACATTCAGTTGCGGTTCTACGACAACAGCTATCCCGGTGCTGACGGCTGTCGTCTGGTTGGCAACGTGGAATATTCGATCTCGATTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
34b401ebf759f3159ed700a00ce466418d7254de29720c2676b6cb524d956075
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8728
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of the Bcep22-like bacteriophage BcepMigl Gill,J.J., Migl,D.M., Summer,E.J., Gonzlaez,C.F. and Young,R. 2014-02-27 — GenBank