Protein

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Genbank accession
YP_009618496.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MTYTLKRECEILVVYKGVGYLFDALPSFDFSQTFSKTSNPRRTLHNNSAKPVTISGAKNTANFSMEVLITDSYIESVFFEIAGWNKLGNNVYEYPDSVPIVEPCTIYILNPNKNVVVRTAFIESIDLPMAKSSPKSLSVSFTASSIDEGVKVEGIGITHRQAAPLSPSPIQISINSTLANHVTSASFNTKSSVGWRQDRGIHDIGRIYTPSRAVVSDMSMTGTINLYATKSLVIPSNKPIIVDLHTHHSGVTIKMDSVHVLKRLEPDDVFVEALDITLMEMSKNVIVDFGGITI
Physico‐chemical
properties
protein length:294 AA
molecular weight: 32303,58980 Da
isoelectric point:6,44579
aromaticity:0,07823
hydropathy:0,01259

Domains

Domains [InterPro]
IPR056389
ATT
1–293
IPR056389
YP_009618496.1
1 294
Architecture
ATT
ATT 1-293 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009618496.1
1 294
Domain Start End Length (AA) Confidence
N-terminal 1 228 228 0,3009
Central domain 229 283 56 0,0102
C-terminal 284 294 10 0,9255
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-228
Central
229-283
C-terminal
284-294

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JSF10
[NCBI] 		1983593 Uroviricota > Caudoviricetes > Demerecviridae > Jesfedecavirus > Jesfedecavirus JSF10
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009618496.1 [NCBI]
Genbank nucleotide accession
NC_042074.1 [NCBI]
CDS location
range 74833 -> 75717
strand -
CDS
ATGACTTACACTCTAAAACGAGAGTGTGAGATTTTAGTAGTATATAAAGGTGTAGGGTATCTATTTGATGCCCTACCATCTTTTGACTTCTCTCAAACATTCTCGAAAACGTCCAATCCTAGAAGGACACTACATAATAATTCAGCCAAGCCTGTTACTATATCTGGTGCTAAGAATACGGCTAACTTTAGTATGGAAGTACTAATAACGGACTCATATATAGAGTCGGTCTTTTTCGAGATTGCTGGATGGAACAAGCTAGGCAATAATGTATATGAATACCCTGACTCCGTGCCTATTGTAGAGCCTTGTACTATTTATATACTAAATCCTAACAAAAATGTAGTTGTACGCACAGCGTTTATAGAGTCTATAGACCTACCTATGGCTAAGTCCTCACCTAAATCACTATCAGTTAGCTTCACAGCATCTAGTATTGATGAGGGGGTAAAGGTAGAGGGCATAGGCATCACGCACCGACAAGCAGCACCCCTATCTCCTAGCCCTATACAAATATCTATAAACTCTACACTAGCTAACCATGTAACCTCCGCATCCTTTAATACTAAAAGTTCAGTGGGCTGGAGACAGGACAGAGGTATACATGATATTGGTAGGATTTACACCCCCTCTAGGGCGGTAGTATCTGACATGTCTATGACTGGTACTATCAACCTCTATGCAACTAAGTCACTAGTAATACCTAGTAATAAACCTATAATAGTTGACTTGCATACACACCACAGTGGTGTTACAATTAAAATGGACTCAGTCCATGTATTAAAACGACTAGAGCCTGACGATGTATTTGTTGAGGCACTGGATATAACTTTAATGGAAATGTCTAAAAACGTAATAGTAGATTTCGGAGGAATTACTATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f649b298eeb1d30911352983b961250cc1997ab0bf8e4c1a9a67a159ec96650a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8067
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50