Protein

View in Explore
Genbank accession
XMN72041.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,69
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MEFIVVQGDKTLNLNNRKPLRSVTKAEHRQSLLSEDIINITVESKTPLALQVGNYIEYENRRYTLNSAPKVKKEQGYYTYDLTFEGVQYLLRDKVYFNLDAQGFQNTADFPLTGEINIFLTTLITNINSISDFTWVLGEYPQNTETKTLTFNNENCLAVLQKICQEYDTEFEIKQDLERKSYTLNIKKIGETLNQTFEYGKGNGLYSLSRVNVNDNVITRLYVFGSTNNIKSGYRDYSQRLRLPISHGKDYIQDDNKVSLFGLKEGVKIFDDIKPTFKGIVSGVTNLENGSQEIEVSNMDFDLNETDSNGTKYLLNDTPAKLHINKGNLAGYEFELLKNGGYNHATKTFRVKQFTDERGQKFPEAGSVFSFAVGDEFTLLDIAMPEQYITNAENKLLEEGQKEYEKQSVNNLKYNLELDPLYLQQIGANTSIFFKIGDYIRVIDEPLKIDKTTRIVDITRDLLDEYNYKIGIADTYEISFVASLLTDIKDTKTVIKTQEQINRRNYLSGYRNQKEFEENVFDADGNFDPTKIRHQSIEAYMLSTGARSQQFALENISLNPNIEGNPARTFISGGKLVHFSLEDDIREWNILPYSRNDLLNQVYYVYAKCSRGNSMGVWHITTEQIRFDSRSDYYYFLCYLLYTPKDGKREAEAMYGNVFMHGGQITAGRIKSLNGQTYFDLDSGEIAGTIKFKSGNGYVEVGSAIQQAVDAVSVGGRNLVRESDVFRNGISADGIGSNITSEGYLRVISSISNNNWHTNWFSRIDEIEEQMTEGETFTITFWVKRLSGYGKPTIYLKDGMGYFYLQGELNNSEFKPLSYTGTWKKAQSLHPHLGWAPANGEFVIKCWKIEKGNKPTDWTPNPQDIEQEIIAVKSKVNQIDNLGTMAWQNSVEKAMLGSTIVQGGYIKTELLNASAIVSNGGGATSAELNNAINSIIIGGRNLMLTPRIIAGYAVEASTSTPLIEGKEYVISFDIKGQNNGVLFLNNSINVNIPVNPSPNEWFRVSKVFTFIKNDYQGKEIFPHIYGATDVRKVKLEKGNKATDWTPAPEDLDALFANLQQGIANMQTSLSDVKTKTDNFASIQGGLMMANLMSVGSNQANQNAFISGITDEGAMSVRFGAGSNYANKHNAPFRVLDNGKVYGSDMEITGGKIARFNISGNTLSGQGIADPNDYLEIKSSGSILSYKKSLSSGRESYALINNDDSILNGNKNNILRLWGRDVNNYTPYNALSIRADGQYATALNIESGDIRVGGEVGYTGSVFLGNRLVYIKNGIIIRV
Physico‐chemical
properties
protein length:1278 AA
molecular weight: 143344,11830 Da
isoelectric point:5,49078
aromaticity:0,10485
hydropathy:-0,43067

Domains

Domains [InterPro]
DC_0279
STR
8–927
DC_0279
IPR007119
Unmapped
135–256
IPR007119 DC_0650
XMN72041.1
1 1278
Architecture
STR
STR 8-1203 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMN72041.1
1 1278
Domain Start End Length (AA) Confidence
N-terminal 1 726 726 0,9507
Central domain 727 939 214 0,4120
C-terminal 940 1278 338 0,2734
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-726
Central
727-939
C-terminal
940-1278

Taxonomy

  Name Taxonomy ID Lineage
Phage Riemerella phage PJL1
[NCBI] 		3390498 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Riemerella sp.
[NCBI] 		2382126 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMN72041.1 [NCBI]
Genbank nucleotide accession
PQ820061 [NCBI]
CDS location
range 8220 -> 12056
strand +
CDS
ATGGAGTTTATAGTAGTACAAGGAGATAAAACTCTTAACCTCAATAATAGAAAGCCTTTGCGTTCGGTTACCAAAGCTGAGCATAGACAGTCTTTGCTATCAGAAGACATAATAAATATTACCGTAGAAAGCAAAACACCTCTTGCTTTGCAAGTAGGCAACTATATAGAATATGAAAACCGAAGATACACACTTAACTCTGCTCCAAAGGTAAAAAAGGAGCAGGGGTATTATACCTATGATTTAACTTTTGAGGGAGTACAATATTTATTGAGAGATAAGGTGTATTTCAACTTGGACGCTCAAGGCTTCCAAAATACGGCGGATTTTCCTTTAACAGGAGAAATAAATATTTTCCTTACGACGCTAATCACAAATATCAATTCCATTTCAGATTTTACTTGGGTTTTAGGAGAATATCCACAAAATACGGAAACTAAAACGCTGACTTTTAATAATGAAAACTGTTTAGCGGTTTTACAAAAAATCTGTCAGGAATACGATACCGAGTTTGAAATCAAGCAGGATTTAGAGAGAAAATCTTACACGCTCAACATTAAGAAGATAGGCGAAACTTTAAACCAAACCTTTGAATATGGAAAAGGAAATGGGCTTTATTCTTTAAGTAGAGTAAATGTGAATGATAATGTGATTACCCGTCTTTATGTTTTCGGCTCAACGAATAATATTAAAAGCGGATACCGGGATTATTCACAGCGTTTGCGATTGCCTATTTCTCACGGAAAGGATTATATTCAGGACGATAACAAAGTCTCTTTATTTGGCTTAAAAGAGGGTGTTAAAATTTTTGACGACATCAAACCTACTTTCAAAGGGATAGTGTCGGGCGTTACCAATTTGGAAAATGGCTCGCAAGAGATAGAGGTTTCTAATATGGACTTTGACCTGAACGAAACTGACAGCAACGGAACAAAGTATTTATTAAACGATACTCCCGCGAAGCTCCATATAAACAAAGGAAATTTGGCAGGATATGAATTTGAGTTGCTTAAAAACGGAGGATATAACCACGCTACTAAGACTTTTAGAGTAAAGCAATTTACAGACGAAAGAGGACAAAAGTTTCCAGAAGCAGGTTCTGTGTTTTCATTTGCGGTTGGCGATGAGTTCACATTGTTAGATATTGCAATGCCCGAACAGTACATTACAAATGCCGAAAACAAACTCCTTGAAGAAGGACAGAAGGAATACGAAAAACAATCGGTAAACAACCTTAAATATAATTTAGAGTTAGACCCTCTGTATCTACAACAGATAGGGGCTAATACGTCTATTTTCTTTAAAATAGGAGATTATATCCGTGTGATAGATGAACCGCTTAAAATAGATAAAACGACACGCATAGTAGATATTACGAGGGACTTATTAGATGAATATAATTACAAAATAGGCATTGCGGACACTTACGAAATCAGCTTTGTAGCAAGTCTGCTTACCGATATTAAAGACACTAAAACGGTTATAAAAACGCAGGAACAAATTAACCGACGAAACTATTTGAGCGGCTACCGTAATCAAAAGGAGTTTGAAGAAAATGTTTTTGATGCAGACGGCAATTTTGACCCAACCAAAATTAGACATCAAAGTATTGAAGCTTATATGCTTTCAACGGGGGCAAGAAGCCAACAATTTGCATTAGAAAATATAAGTCTGAATCCTAACATAGAGGGCAATCCTGCAAGAACATTTATTAGCGGTGGGAAATTAGTTCATTTTTCCTTAGAAGACGATATTAGAGAGTGGAACATATTGCCATACAGCCGTAATGACCTGTTAAATCAAGTTTACTATGTCTATGCAAAATGTTCAAGAGGAAATAGTATGGGGGTATGGCATATCACCACCGAGCAGATAAGGTTTGATAGTCGGTCAGATTATTATTATTTCTTGTGTTACTTACTCTACACACCAAAAGACGGTAAACGAGAAGCAGAAGCAATGTACGGCAATGTGTTTATGCACGGAGGGCAAATAACGGCAGGGAGAATTAAATCGCTCAACGGACAAACCTATTTTGATTTGGATAGTGGGGAAATAGCAGGAACGATTAAGTTCAAAAGCGGTAATGGTTATGTGGAAGTTGGGAGTGCTATACAACAAGCGGTAGATGCGGTGAGTGTAGGAGGCAGAAATTTAGTGAGAGAATCGGATGTTTTTAGAAATGGTATATCGGCGGACGGAATAGGTAGTAATATAACTTCAGAAGGATACTTGAGGGTTATTAGCTCAATTTCAAATAACAATTGGCATACAAACTGGTTTTCAAGAATAGACGAAATAGAGGAGCAAATGACAGAAGGCGAAACCTTCACTATTACCTTTTGGGTGAAAAGGTTGAGTGGTTATGGCAAGCCTACTATTTATCTAAAAGATGGAATGGGCTACTTTTATTTGCAAGGCGAATTAAACAACTCCGAATTCAAGCCTCTAAGCTATACAGGAACTTGGAAAAAAGCCCAATCATTACACCCTCATTTAGGTTGGGCACCTGCAAATGGAGAGTTTGTCATTAAATGTTGGAAAATTGAAAAAGGTAATAAACCAACGGATTGGACACCCAATCCGCAAGATATAGAGCAGGAAATAATAGCGGTAAAGTCAAAAGTTAATCAAATAGATAATCTTGGTACAATGGCGTGGCAGAACTCGGTAGAAAAAGCGATGTTGGGTAGTACGATAGTACAAGGGGGGTATATCAAAACAGAACTCTTAAACGCTTCGGCGATAGTGAGTAACGGTGGAGGAGCAACTTCGGCAGAATTAAATAATGCCATCAATAGTATCATTATCGGAGGTCGGAATTTAATGCTAACACCTCGAATAATCGCTGGTTATGCAGTGGAAGCAAGCACTTCAACTCCGTTGATTGAGGGTAAGGAATATGTTATTTCCTTTGACATTAAGGGGCAGAATAATGGTGTTTTGTTTTTAAACAACTCAATCAATGTAAATATACCTGTCAATCCTAGTCCAAACGAGTGGTTTAGAGTTTCAAAAGTATTCACATTCATTAAAAACGACTATCAAGGAAAGGAAATTTTCCCCCATATCTATGGTGCAACTGATGTTAGGAAGGTTAAATTAGAAAAAGGGAATAAAGCAACCGATTGGACACCCGCCCCCGAAGACTTGGACGCACTATTTGCCAACCTTCAACAAGGAATAGCTAATATGCAAACCTCTTTGTCTGATGTGAAGACCAAGACCGATAACTTCGCATCTATCCAAGGCGGGTTGATGATGGCTAATTTAATGAGTGTAGGAAGCAACCAAGCCAATCAAAATGCTTTTATTAGTGGTATTACCGACGAGGGAGCAATGAGCGTGAGATTTGGAGCAGGTAGCAATTATGCCAATAAACATAATGCACCATTTAGGGTGCTGGATAATGGGAAAGTTTATGGCTCTGATATGGAAATTACAGGTGGTAAAATAGCAAGGTTCAATATTAGCGGAAATACACTTTCGGGGCAAGGAATAGCAGACCCAAACGACTATTTAGAAATAAAGTCATCTGGAAGCATACTTTCATATAAAAAAAGTCTTTCATCTGGGAGAGAAAGCTATGCTCTCATCAATAATGATGATAGTATTTTAAACGGAAATAAAAACAATATACTTCGGCTCTGGGGGCGTGATGTGAACAATTATACGCCCTACAACGCCCTATCTATAAGGGCTGACGGACAGTATGCTACTGCCTTAAATATAGAATCGGGAGATATTCGTGTGGGTGGAGAGGTAGGATATACAGGTTCGGTCTTTTTAGGAAATAGACTAGTCTATATAAAAAATGGAATAATCATAAGAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
54b708e59ce34630f5389f9cf91adf20b1e6205b55c962ecb90f51b03d8aa07e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2588
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50