Protein

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Genbank accession
WBC28474.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTDKKKSQLLSENPVSTFTGNETGDCVQGGINKGFLYSTLKSYVAGDYMPKATYDPDEIEADVFDSANTKYDNSTSGMTADDVQAALDEAYEQSLIANAGAITEPTFTDNGDGTVTVGNVDVRFYDNVNYTGAIKEFTVSGDTFTLVDSLTQLNYIVADYNSGSPILKLINSATTITGGTIQPIFSLARSGTDICKLEWNSYGLGYAEKAFKKDVELNRFSIKDGLAITETGTRNLVVASGNVYYGTKLATLNEVDTSGGDDICFFYHVAGVYTESNATQYNNTQYDNGTALATLSNNKYAVNWIWRNVDENKDRLCMVLGGGNYSLAEAENSSVPVAPVVVSGMCVLVGRVIVEKNATTATAIELVSDVKISTAGVINHDDTANKGIAASGVTYGHVTDQAQTFEGDKNFSGKTTLEAEIIAEDIFRARDIEMSDKTASTILHLDSSKEINSLPTSTYPSLAELAYVKGVTSAIQTQMDKAKVKVIQLSCSDLTTDLTTGTSKAYLRMPYAMTLTEVRASVLTAPTGAALTIDINESGTTILSTKITIDATEKTSETAATAPVISDSSLADDAEITIDIDQVGSTIAGKGLIVTLIGYKS
Physico‐chemical
properties
protein length:601 AA
molecular weight: 64043,52450 Da
isoelectric point:4,43983
aromaticity:0,07321
hydropathy:-0,13361

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WBC28474.1
1 601
Domain Start End Length (AA) Confidence
N-terminal 1 105 105 0,9819
Central domain 106 304 200 0,1325
C-terminal 305 601 296 0,7740
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-105
Central
106-304
C-terminal
305-601

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodobacteraceae phage LS06-2018-MD05
[NCBI] 		3003838 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBC28474.1 [NCBI]
Genbank nucleotide accession
OP947161 [NCBI]
CDS location
range 41947 -> 43752
strand +
CDS
ATGACTGATAAAAAAAAATCACAATTATTGTCAGAAAATCCAGTATCGACATTTACCGGAAATGAAACTGGCGATTGCGTACAAGGGGGAATTAATAAAGGATTTTTATATAGTACTTTGAAAAGTTATGTAGCTGGCGATTATATGCCAAAAGCAACATACGACCCAGATGAAATTGAAGCAGATGTTTTTGATTCCGCAAATACAAAGTATGATAATTCAACAAGCGGAATGACTGCGGATGATGTTCAGGCAGCATTAGATGAAGCTTACGAGCAATCATTAATAGCAAATGCGGGCGCAATAACAGAACCAACTTTTACAGATAATGGCGATGGAACGGTAACAGTCGGTAACGTAGATGTGCGATTTTATGATAACGTAAATTATACAGGTGCGATAAAAGAATTTACAGTATCAGGTGACACTTTTACATTAGTTGATAGCTTAACGCAATTAAATTACATCGTAGCTGATTATAATTCAGGTAGTCCGATATTAAAATTAATAAATAGCGCAACGACAATAACGGGTGGAACTATTCAGCCTATATTTTCACTTGCTAGAAGCGGTACTGACATTTGCAAATTAGAATGGAATAGCTACGGTTTAGGATATGCAGAAAAAGCATTTAAAAAAGATGTTGAATTAAATAGATTTTCTATAAAAGATGGTTTGGCTATTACTGAAACTGGAACTAGAAATTTAGTAGTAGCATCTGGAAATGTATATTACGGAACCAAACTAGCTACATTAAATGAGGTTGATACTTCGGGGGGTGATGATATTTGCTTTTTCTATCATGTAGCAGGAGTTTACACAGAAAGCAATGCAACTCAATATAATAACACTCAATATGATAACGGTACAGCTTTAGCAACTCTTTCAAACAATAAATATGCCGTCAATTGGATTTGGAGGAATGTAGATGAAAATAAAGACAGACTATGTATGGTTTTAGGTGGTGGTAATTATTCATTAGCTGAAGCTGAAAATAGTAGTGTGCCAGTTGCTCCAGTTGTAGTAAGCGGAATGTGTGTTTTAGTTGGTCGGGTAATTGTTGAAAAAAATGCAACAACAGCTACGGCAATTGAATTAGTTTCAGATGTAAAGATATCAACAGCAGGCGTTATAAATCACGATGATACAGCAAATAAAGGAATAGCTGCAAGTGGAGTAACTTACGGTCACGTAACAGATCAGGCGCAAACGTTTGAAGGTGATAAAAATTTTAGTGGAAAGACTACTCTTGAAGCTGAAATAATTGCAGAAGATATATTTAGAGCTAGAGATATTGAAATGTCTGATAAGACAGCAAGTACAATTTTACATTTAGATTCATCTAAAGAAATTAACAGCTTACCAACTTCCACCTATCCAAGCCTTGCAGAATTAGCTTATGTAAAAGGAGTTACAAGTGCTATACAAACGCAAATGGATAAAGCAAAAGTAAAAGTAATTCAATTATCATGTTCCGATTTAACAACAGATTTAACAACAGGCACAAGTAAAGCTTATCTTAGGATGCCTTATGCGATGACATTAACCGAAGTTAGGGCAAGTGTTTTAACAGCTCCAACAGGGGCAGCTTTAACGATAGATATAAACGAAAGCGGAACAACTATATTAAGTACTAAAATAACAATTGACGCAACGGAAAAGACAAGTGAAACGGCTGCAACAGCTCCAGTTATTTCTGATAGTTCTTTAGCTGATGATGCTGAAATAACAATAGATATTGACCAAGTAGGCTCAACTATTGCTGGGAAAGGTTTAATAGTAACATTAATAGGTTATAAATCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c9ee79a6f5c7149737205ce36769c7194057be5f6d539d5e598def86d9523666
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7434
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Horizontal gene transfer and CRISPR targeting drive phage-bacterial host interactions and co-evolution in pink berry marine microbial aggregates Kosmopolous,J.C., Campbell,D.E., Whitaker,R.J. and Wilbanks,E.G. — — GenBank