Protein

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Genbank accession
ASV43072.1 [GenBank]
Protein name
exonuclease SbcC
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MADFSQTSFKGGVIAPRLQFNEYESAYHHSIEDAVNFVVTEQGSLITRCGSEEVGLCQDGEVRLFRLPAIDAPSNDIIVEVGNTNIAVWVNDVRQVVAATPSEWRNTLDRIQTAYDTIGDDLGAANTGRLIMVHPALQPKRLYRDNNNAWKFVNMHTGAVPAEWSSSNYPQTVGIFQNRVWYVGSPVHRTYFWATRAGKLEDIAPSTANNPNDPISFVGIMEGTPCWIIASSDVLTIGTTINDYQLAASTGVSVTAATAILRRSSVQGTAAVQGIPAEEQVIFCSRNKSKVYAMNYVREQDNWIPDEMSSQAQHLFTPISSAKGASVRRVAYISDAAKSLWVVLENGKINYCCFDRTTDTKAWTQLELSGGKVIDIAAAFNPDSDYAYVAVVRSKVVNGAQKNYTVLEKIPSPRTDWKRADGWVVAQVNQNGDVLNLDRYIGRTAVIFSKYGLEAEVEVNNIGLTHRINGYDSNTTYYVGYKMDSYFRTLTPSNGDMKKSMFGSKMRVSKVQLALFDSVEPTVNGEPADDRSTDDIMDARLLDFSSNSNSGNGTRLVDYNPLGWEEDGKVNVSVEQPFPCEVVGIFSVVQSNKV
Physico‐chemical
properties
protein length:594 AA
molecular weight: 65553,63130 Da
isoelectric point:5,18834
aromaticity:0,09428
hydropathy:-0,27290

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ASV43072.1
1 594
Domain Start End Length (AA) Confidence
N-terminal 1 489 489 0,8402
Central domain 490 583 95 0,0618
C-terminal 584 594 10 0,9301
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-489
Central
490-583
C-terminal
584-594

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JSF33
[NCBI] 		1983610 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ASV43072.1 [NCBI]
Genbank nucleotide accession
KY883647 [NCBI]
CDS location
range 29160 -> 30944
strand -
CDS
ATGGCAGACTTCAGTCAGACTAGCTTCAAGGGGGGCGTAATTGCTCCCCGACTTCAGTTCAACGAATATGAGTCGGCATACCATCACTCTATCGAGGATGCCGTCAACTTTGTCGTCACTGAACAAGGAAGCTTAATAACACGATGCGGCTCGGAGGAAGTTGGATTGTGCCAAGATGGCGAAGTCCGCCTTTTCCGATTGCCAGCTATTGATGCTCCTTCTAATGATATCATCGTAGAGGTGGGCAACACCAACATAGCTGTTTGGGTTAATGACGTGCGCCAAGTCGTGGCTGCCACCCCCAGTGAGTGGCGCAATACGCTTGACCGAATCCAAACAGCATATGATACGATTGGCGATGACTTAGGCGCAGCTAACACAGGGCGCTTAATCATGGTTCATCCCGCGCTGCAACCCAAGCGACTATACCGCGACAACAACAACGCATGGAAATTTGTCAACATGCACACGGGCGCGGTTCCTGCTGAGTGGTCATCCAGTAATTACCCTCAGACAGTGGGCATTTTCCAAAACAGAGTTTGGTATGTGGGTTCCCCCGTTCACCGGACTTATTTTTGGGCTACGCGAGCAGGTAAGTTGGAAGATATCGCACCTAGCACGGCCAACAATCCTAATGACCCTATTAGCTTCGTGGGCATTATGGAGGGAACGCCTTGTTGGATTATCGCGTCTTCTGATGTGTTGACCATCGGAACAACAATAAACGACTACCAATTGGCTGCGTCTACTGGTGTGTCGGTCACAGCGGCGACGGCCATACTGCGTCGTTCGTCTGTTCAAGGAACGGCGGCAGTCCAAGGAATTCCTGCGGAGGAGCAAGTCATTTTCTGCTCCCGCAACAAGTCCAAAGTGTATGCCATGAACTACGTCAGGGAACAAGATAACTGGATTCCTGACGAAATGTCGAGCCAAGCGCAACACTTGTTCACGCCGATTTCGTCTGCGAAAGGCGCTAGTGTCCGTAGAGTCGCCTACATCTCAGATGCGGCGAAATCCCTTTGGGTTGTGTTGGAGAATGGCAAAATCAACTATTGTTGTTTTGACCGCACGACGGACACCAAAGCTTGGACTCAACTAGAACTTTCAGGCGGAAAAGTCATTGACATTGCTGCTGCCTTCAATCCGGATTCTGACTACGCTTACGTTGCTGTAGTCAGAAGCAAGGTGGTAAACGGAGCACAGAAGAATTACACCGTACTGGAGAAAATCCCGTCGCCTCGCACTGACTGGAAGAGAGCGGACGGGTGGGTCGTGGCACAAGTTAACCAAAATGGCGACGTGCTGAACTTAGACAGATACATCGGCAGAACGGCAGTAATTTTTAGCAAATACGGACTAGAAGCTGAGGTTGAAGTAAACAACATCGGTTTGACGCACCGAATCAACGGCTACGATTCGAATACCACATACTATGTGGGATACAAGATGGATAGCTATTTCCGAACATTGACCCCATCAAACGGCGACATGAAAAAGTCAATGTTCGGGAGCAAAATGCGAGTCAGCAAGGTGCAATTGGCCCTTTTTGATAGTGTAGAACCGACTGTAAACGGCGAACCTGCCGACGACCGCAGCACGGACGATATTATGGATGCGAGATTATTGGATTTTTCATCCAACTCGAACAGCGGCAATGGCACAAGATTGGTTGACTACAACCCCTTGGGTTGGGAAGAAGACGGCAAAGTGAATGTGTCCGTTGAACAACCTTTCCCGTGCGAAGTAGTCGGTATTTTTTCAGTAGTTCAGTCCAACAAGGTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f46a63d4b79b04fea0cabbb4e63427955b34774d9c73c61c597261d6eb5282ef
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8618
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50