Protein

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Genbank accession
XPK41832.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MSRELMPKSGIMMPHVVINRDAAVVGVSTIDGVAGAVDLTGKYLQKTDAADTYLTKTEGATKTFVTDVIEPIMTGALFKDDPVVANDVAFRSGGANGVESVDMIKVTPENTIKLGSYASSVQGVEIHSAGRLQVVDQSDSGVETKYPVYSKRFRPEIEDLPFAAIGSYVKDSKGRTVGVTRTGINSDIKQLTQKVTFTQPVTIADAVGDYDAVTLRQLRNSGGGSGGPTMSGISNFGIGDFHLRDSRAFIPAFEVVSDGQLLNRADYPDLWAYAQLLTPISDSLWVGDVTQRGRYSTGDGTTTFRVPDRNGIQLNSLAALYGRGDGGASLANGMVFDSAAPNIYGDIGGVVAYGQTGAIIRGQEETPLAPQPVTGNGVLKVSLDASKSSPIYGRSNSEIMGRNFVGVWTIRAHGGFTAANTSWSVIDSDSTEPASGTVVRGGSVKSEYKIGTNTTYQAYLQAYGKIGGLASDRGAVVSNGVQEWFFNQSGTLYLPDSASQIGTTRSDGALHIDAYVRSRDIVVNPLNAVGVGASERNAIRMTNYANVPEGGYVNTISGDWYDGSWLLGGVRSGSTLLDRAQLNVFDGVGSSASFAFNSNGVASCQEWRSTSDERVKSNIERISDPLSKMRNIKGVKWVLETNGSIGYGFIAQDVEKDFPEAVSETKASPVTLRDGSVLDNVKSVNTSGVAAALHHEAILELMKQVEDLKKEVSELKSSK
Physico‐chemical
properties
protein length:719 AA
molecular weight: 76408,36600 Da
isoelectric point:5,30702
aromaticity:0,07510
hydropathy:-0,21057

Domains

Domains [InterPro]
DC_1514
STR
20–333
DC_1514 DC_0203
DC_2049
STR
315–565
DC_2049 IPR030392
IPR030392
CHP
611–662
IPR030392 Coil
XPK41832.1
1 719
Architecture
STR
RBD
STR 20-565 | RBD 595-719
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPK41832.1
1 719
Domain Start End Length (AA) Confidence
N-terminal 1 76 76 0,9606
Central domain 77 275 200 0,3558
C-terminal 276 719 443 0,9127
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-76
Central
77-275
C-terminal
276-719

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage KarlSchell_Bas89
[NCBI] 		3398421 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPK41832.1 [NCBI]
Genbank nucleotide accession
PQ850613.1 [NCBI]
CDS location
range 11126 -> 13285
strand +
CDS
ATGTCTAGAGAATTAATGCCCAAATCTGGCATAATGATGCCTCATGTTGTTATTAACCGAGATGCTGCGGTAGTGGGTGTTTCCACTATTGACGGTGTTGCTGGTGCTGTAGATTTAACAGGAAAGTATTTACAGAAAACGGATGCCGCTGATACATATCTAACCAAAACAGAAGGTGCTACAAAAACTTTTGTTACTGATGTAATTGAACCTATCATGACCGGTGCTTTGTTTAAAGATGACCCTGTTGTTGCAAATGATGTAGCTTTCCGTTCAGGTGGGGCTAATGGTGTAGAATCTGTGGATATGATCAAAGTCACTCCAGAGAACACTATTAAACTCGGTAGTTATGCATCTTCTGTTCAGGGTGTAGAGATTCACTCAGCAGGTCGTCTTCAGGTTGTTGATCAGAGTGATAGTGGTGTAGAAACTAAATACCCTGTGTATTCTAAACGCTTCCGTCCTGAGATTGAAGATTTACCTTTTGCTGCAATTGGTTCTTATGTTAAGGACTCTAAAGGTCGTACTGTCGGTGTAACTCGTACCGGTATCAACTCTGATATCAAACAGCTTACACAGAAAGTCACTTTTACTCAACCTGTAACCATAGCTGATGCTGTAGGCGATTATGATGCAGTAACATTGAGACAACTTCGTAACAGTGGTGGTGGTTCTGGTGGTCCTACCATGAGTGGTATCTCGAACTTTGGTATCGGTGATTTCCACCTACGTGACAGTCGTGCTTTTATCCCAGCCTTTGAAGTAGTGTCTGATGGTCAGCTTTTGAATCGTGCTGATTATCCAGATTTGTGGGCTTATGCTCAACTATTAACCCCTATTAGTGATTCTCTTTGGGTAGGAGACGTTACCCAAAGAGGTAGATACTCCACAGGCGATGGCACCACCACTTTCCGTGTCCCTGACCGAAATGGTATTCAGCTTAACTCCCTTGCAGCTCTTTATGGACGAGGTGATGGGGGTGCTTCCTTAGCTAATGGTATGGTTTTTGACTCTGCCGCTCCTAACATCTACGGTGACATTGGTGGTGTTGTAGCCTATGGTCAGACTGGTGCTATTATACGAGGTCAGGAAGAAACTCCACTAGCTCCACAACCAGTTACAGGAAACGGTGTATTAAAGGTAAGCTTGGATGCTTCCAAATCAAGTCCGATATACGGTCGCAGTAACTCAGAAATCATGGGTCGTAACTTTGTTGGTGTTTGGACTATTCGCGCTCATGGTGGCTTTACCGCTGCTAACACTTCTTGGTCTGTTATTGATAGTGACTCGACAGAGCCTGCATCCGGAACTGTTGTCAGGGGCGGTAGTGTCAAATCTGAGTATAAGATTGGTACAAACACGACGTATCAAGCGTATCTTCAGGCATACGGAAAAATTGGTGGGTTAGCAAGTGACCGAGGTGCAGTTGTATCAAATGGGGTCCAAGAGTGGTTCTTTAATCAATCTGGGACTTTGTATTTACCCGACTCAGCGTCGCAAATCGGCACGACAAGGTCTGATGGCGCGTTACATATTGACGCATACGTCAGGTCGAGGGATATTGTTGTAAATCCACTGAACGCTGTTGGAGTAGGAGCATCAGAAAGAAACGCCATCAGGATGACTAACTACGCGAATGTCCCAGAAGGAGGGTACGTAAATACTATTAGTGGAGATTGGTATGACGGAAGTTGGTTACTTGGCGGAGTCAGAAGTGGCTCGACATTATTGGACCGTGCACAGCTTAACGTTTTTGATGGCGTTGGTAGTAGCGCCTCGTTTGCATTTAATTCTAATGGTGTAGCAAGCTGCCAAGAATGGAGAAGCACATCTGATGAACGGGTTAAAAGCAATATTGAGCGTATCAGTGATCCACTCTCCAAGATGAGAAACATCAAGGGGGTTAAATGGGTTCTGGAAACCAATGGATCAATAGGATACGGATTCATCGCACAGGACGTAGAGAAGGATTTTCCTGAAGCTGTATCAGAAACAAAGGCTTCACCAGTCACTCTGCGAGATGGGTCAGTGTTGGATAACGTAAAGTCAGTTAACACCTCGGGCGTTGCTGCTGCGTTGCACCATGAAGCTATTCTTGAACTTATGAAGCAGGTTGAAGACCTCAAGAAAGAGGTGTCAGAGCTTAAGTCTAGTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a864c62d5cf0ff6b0526f75c7f4d738271a0cf147f64b4a7e339bc8d892ff6d4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6109
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie Maffei,E., Willi,L. and Harms,A. — — GenBank