Protein

View in Explore
Genbank accession
AYP30089.1 [GenBank]
Protein name
tail fiber protein and host specificity
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MQIWIHDKSMRKVCALNNNVPDMLPYSSSQWHTYLEYSTSTFDFTIPKIVNGKLHDDIKYINDQMFVSFYFDNSYHVFYVSQLVENDFSFQVTCNNTNLELAAEMSRPLASVDGPKTLEWYLQNLDLLGFAGLEIGVNEISDRTRTLTFESQSGTKLEQLHSLMNQFDAEFIFRTELNRDGTMKRFIIDIYQEADKNHHGIGKVRGDVILYYQSGLKGVQVTSDKTQLFNAGVFTGANGVNLDSVEFEEKNELGQVEFYSRKGTSFVFAPLSRERYPSTMNPDSADNWTRKDFQTEYKDVESLKAYALRTIKQYAYPLMTYTVSVQSSFIENYKDINLGDTVKIIDNNFRGGLALEARVSEMIISFDNPANNSVVFTNFKKLDNKPSDALQQRIDEIVSKSLPYHVEIRTTNGTVFKNGIGRSTVKPILKQGDKIVDATYRFVIDGTIKYVGMTYDMVASEINQPTTLTISAWVDNKEVASEEVTFVNVSDGKQGPKGDDGKTTYFHTAWSYSADGTDGFTTVYPNLNLLDGTRDFSGNWENGGEWTNDGTYKGLVVKKRVWKWAGIYKTFTAPKDGKYTFSAYVKSSGNAANIIRFVALNGVDLYSSIRYFDNNFDWLRDSFTITLKAKDTIVAKYEIAGSGTDSILWTAGHKWEEGSVATPWMPSASEVKTADYPSFIGHYTDYTQADSPNPQDYTWSLIRGNDGIPGPKGADGRTPYVHFAYADSADGQKGFSLTQTGSKRYLGVLTNFIKEDSTNPADYTWSDAAGSISVGGRNLLVKTNQGITNWDWTMSNGDKSVEEVNIDGIRAVKLTKGTKTANTGWNYIQYRGLLRKLIRPNTKYTLSFDVKPSVDVSFSATLIRGNRKDELTDTVLMNKALANQWTKVSCVLTNKETLSGDLNQVVYLAGMPTTNGNWVIIKNIKLEEGDIPTQWTPAIEDIQDEIYSKADDVLTQAQLNRLNEMNSIIKAELDAKASLDTLNQWVEAYQNFVNANNANRAQAEKDLADASARVTKLENDLNDMSERWNFIDSYMAASNEGLVVGKKDKSSSIMFNPNGRISMFSAGNEVMYISKGVINIENGIFSKTIQIGRYREEQDLLNPDRNVIRYVGGA
Physico‐chemical
properties
protein length:1114 AA
molecular weight: 125181,50770 Da
isoelectric point:5,30537
aromaticity:0,11131
hydropathy:-0,45772

Domains

Domains [InterPro]
DC_0002
STR
1–679
DC_0002 DC_0002
IPR010572
ENZ
142–381
IPR010572 IPR008983 DC_0002 G3DSA:2.60.120.260 Coil
IPR008979
STR
784–928
IPR008979
AYP30089.1
1 1114
Architecture
STR
STR 1-1114
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage SWK1
[NCBI] 		2419658 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus thermophilus
[NCBI] 		1308 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYP30089.1 [NCBI]
Genbank nucleotide accession
MH892377.1 [NCBI]
CDS location
range 15615 -> 18959
strand +
CDS
ATGCAAATTTGGATTCATGATAAAAGCATGCGCAAGGTGTGTGCTTTAAACAACAACGTTCCTGACATGCTTCCATACTCGAGCAGTCAGTGGCACACCTACCTTGAATACTCAACCAGTACATTTGACTTTACGATTCCTAAAATTGTAAATGGAAAACTTCACGATGATATTAAATACATCAATGATCAGATGTTTGTATCATTCTATTTTGACAATTCCTACCACGTTTTTTATGTTTCTCAACTAGTTGAAAATGATTTTAGTTTTCAAGTCACTTGTAATAATACTAACTTAGAATTAGCAGCAGAAATGTCGCGTCCTTTAGCCAGTGTTGATGGTCCTAAAACCCTTGAGTGGTATCTTCAAAACCTTGATTTACTTGGTTTTGCAGGACTTGAAATAGGTGTCAATGAAATTTCTGATAGAACAAGAACGCTTACTTTTGAATCGCAAAGTGGCACAAAGCTAGAACAACTTCATAGCTTGATGAATCAATTTGATGCTGAATTTATTTTTCGTACCGAATTAAACCGAGACGGAACTATGAAACGTTTCATCATCGACATCTACCAAGAAGCAGATAAAAACCATCACGGAATTGGAAAGGTTCGAGGAGATGTCATTCTCTACTATCAAAGCGGTCTGAAAGGCGTTCAAGTAACTAGTGATAAGACACAACTGTTTAATGCTGGTGTTTTCACTGGTGCAAACGGGGTTAATCTTGATAGCGTTGAGTTTGAAGAAAAAAATGAGTTAGGACAAGTAGAGTTCTATTCTCGAAAGGGCACTAGCTTCGTTTTCGCCCCACTATCAAGGGAACGCTACCCATCTACCATGAATCCAGACAGCGCTGATAACTGGACACGTAAGGATTTTCAAACAGAATACAAGGACGTTGAATCCTTAAAAGCTTACGCCTTGCGTACTATCAAGCAGTATGCTTATCCACTAATGACATATACCGTAAGTGTTCAATCTAGTTTCATTGAAAACTACAAGGATATTAATCTAGGTGACACTGTTAAAATCATCGATAATAATTTTAGAGGTGGTTTAGCCCTCGAAGCGCGTGTATCTGAAATGATTATCAGCTTTGACAATCCTGCGAATAATTCAGTAGTTTTCACCAACTTTAAAAAGTTGGATAATAAACCATCGGATGCCTTGCAACAACGTATCGATGAGATTGTTTCTAAGTCACTGCCATATCATGTTGAGATAAGGACCACGAATGGAACAGTATTTAAGAACGGCATTGGTCGTTCTACTGTTAAACCAATTTTGAAACAAGGCGATAAAATTGTTGATGCAACTTATCGATTTGTGATTGACGGTACTATTAAATACGTAGGTATGACCTATGACATGGTAGCGTCAGAGATTAACCAACCAACCACGCTTACTATCTCAGCGTGGGTAGATAACAAAGAAGTAGCTTCAGAAGAAGTTACTTTTGTAAATGTATCAGATGGTAAACAAGGACCTAAGGGCGATGATGGGAAGACTACATATTTTCACACAGCATGGTCTTACAGCGCAGACGGCACTGATGGTTTCACGACTGTTTATCCTAATTTGAATTTGTTGGATGGTACTAGAGATTTTAGCGGTAATTGGGAAAATGGTGGAGAATGGACGAACGACGGAACCTACAAAGGCTTAGTTGTTAAAAAAAGAGTGTGGAAATGGGCAGGAATTTATAAAACATTCACAGCACCTAAAGACGGAAAATACACTTTCTCAGCTTATGTTAAAAGTTCAGGAAATGCAGCAAATATAATTAGATTTGTGGCCCTTAACGGTGTGGATTTATACTCTTCAATAAGGTACTTTGATAATAACTTTGATTGGCTTAGAGACAGTTTTACTATAACTCTGAAAGCCAAGGATACCATTGTGGCCAAATATGAAATAGCTGGTTCTGGAACAGATTCAATTCTATGGACGGCTGGGCATAAGTGGGAAGAGGGTTCAGTCGCTACCCCTTGGATGCCCTCGGCTAGCGAAGTCAAAACTGCTGACTATCCAAGTTTCATCGGACACTACACAGACTACACGCAAGCAGATAGTCCTAACCCTCAAGATTACACTTGGAGTCTCATTCGAGGGAATGATGGTATTCCTGGTCCTAAAGGTGCGGACGGACGAACGCCTTACGTGCACTTCGCTTATGCCGATAGTGCCGATGGTCAAAAGGGTTTCAGTTTGACACAGACTGGAAGTAAACGCTATTTAGGTGTGCTAACCAACTTCATAAAAGAAGACAGCACAAACCCAGCAGATTATACATGGAGTGACGCTGCTGGTAGCATTTCGGTTGGTGGTCGGAACTTACTTGTAAAAACCAATCAAGGTATTACTAATTGGGATTGGACGATGTCGAATGGTGACAAGAGCGTTGAAGAAGTCAATATTGATGGTATTCGTGCTGTTAAATTAACCAAAGGTACAAAAACAGCAAATACTGGTTGGAACTACATTCAATATCGAGGTTTGTTGCGTAAACTCATACGACCAAACACAAAGTACACTCTTTCTTTTGATGTAAAACCAAGTGTTGATGTAAGTTTTTCAGCAACGCTAATAAGAGGCAACCGCAAAGATGAATTGACTGATACTGTCCTTATGAATAAAGCTTTGGCAAATCAATGGACTAAAGTATCATGTGTTCTGACAAATAAAGAAACGTTATCAGGTGATTTAAATCAAGTTGTCTACTTGGCAGGTATGCCAACAACAAACGGTAATTGGGTAATAATTAAGAATATCAAACTCGAAGAAGGTGACATACCTACTCAGTGGACACCTGCAATTGAGGACATACAAGATGAAATTTATTCCAAGGCAGACGATGTCCTAACACAAGCACAACTCAACAGACTGAACGAAATGAACTCTATTATTAAAGCTGAATTAGACGCTAAAGCGTCGCTTGATACACTCAATCAGTGGGTGGAAGCCTATCAAAATTTTGTTAACGCAAACAATGCCAATCGTGCACAAGCTGAAAAAGATTTAGCTGATGCAAGTGCTCGTGTAACTAAACTAGAAAACGACTTAAATGATATGTCAGAACGTTGGAATTTTATCGATAGCTACATGGCAGCATCAAATGAAGGTCTTGTTGTTGGTAAAAAAGATAAATCAAGCTCTATCATGTTCAATCCAAACGGGCGTATCTCAATGTTCTCAGCTGGGAACGAGGTAATGTACATTTCAAAAGGTGTCATCAATATCGAAAACGGTATTTTCTCTAAAACTATCCAAATCGGACGATATCGAGAGGAACAAGATTTATTGAATCCAGACCGTAATGTCATTAGATACGTAGGAGGTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
40409ba8aeee0567c189594091b87180dc3a1c93bb9e3ab82dd256a3328992dd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7378
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biodiversity of Streptococcus thermophilus Phages in Global Dairy Fermentations Lavelle,K., Martinez,I., Neve,H., Lugli,G., Franz,C., Ventura,M., Bello,F., Sinderen,D. and Mahony,J. 2018 — GenBank